Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_D11
(430 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07777.1 68415.m00893 expressed protein 30 0.58
At3g28180.1 68416.m03521 glycosyl transferase family 2 protein s... 29 1.8
At1g73090.1 68414.m08451 expressed protein 28 2.3
At3g21510.1 68416.m02714 two-component phosphorelay mediator 3 (... 28 3.1
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 27 4.1
At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1... 27 4.1
At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ... 27 4.1
At5g58720.1 68418.m07356 PRLI-interacting factor, putative simil... 27 5.4
At1g21240.1 68414.m02654 wall-associated kinase, putative simila... 27 5.4
At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF... 27 7.1
At4g30010.1 68417.m04270 expressed protein 26 9.4
At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related conta... 26 9.4
At3g62820.1 68416.m07058 invertase/pectin methylesterase inhibit... 26 9.4
At3g28100.1 68416.m03507 nodulin MtN21 family protein similar to... 26 9.4
>At2g07777.1 68415.m00893 expressed protein
Length = 262
Score = 30.3 bits (65), Expect = 0.58
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -2
Query: 255 LSTIVPKFFLTVSGAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLA 91
LS+ V FF G+++ S F+L ++ S +FR L R+T C LA
Sbjct: 11 LSSSVAGFFGRFLGSESVSRFNLIIFLILLVFSICLFRSLKQYLGKRMTQWCYLA 65
>At3g28180.1 68416.m03521 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 673
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 122 APKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNL 280
A KE+ +ES + + +L+E+ + + ETVKK+ G ++ N+ N+
Sbjct: 570 AEKEEKLHRRNSESGLELLSKLKEQETNLVGQETVKKSLGGLMRPKNKKKTNM 622
>At1g73090.1 68414.m08451 expressed protein
Length = 306
Score = 28.3 bits (60), Expect = 2.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 208 LGPGDC*EKLWHDGRQLQRI 267
+GPG C + W +GR+LQ++
Sbjct: 272 IGPGVCVGQAWQEGRELQQV 291
>At3g21510.1 68416.m02714 two-component phosphorelay mediator 3
(HP3) identical to ATHP3 [Arabidopsis thaliana]
GI:4156245
Length = 154
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -2
Query: 255 LSTIVPKFFLTVSGAKADSTFSLNSSIVFFA-LSASVFRLL---SSLGASRLTNACTLAR 88
+S +V FF D + SL+ +V F + V +L SS+GA R+ NAC + R
Sbjct: 42 VSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFR 101
Query: 87 QIANK 73
+
Sbjct: 102 SFCEQ 106
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 98 VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESA 208
VH KRD+ + L ESA++ ++EL + + S+
Sbjct: 563 VHEAHKRDSSSQVKELEARVESAEEQVKELNQNLNSS 599
>At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1
family protein similar to 13S condensin XCAP-D2 subunit
[Xenopus laevis] GI:3764087; contains Pfam profile
PF04594: Non-SMC condensin subunit, XCAP-D2/Cnd1
Length = 1439
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 140 SLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYK 274
SL T E K + E + E ALA + V +NF ++++ +F K
Sbjct: 1171 SLLTFTEKGIKKLIESFKSYEHALAEDLVTENFRSIINKGKKFAK 1215
>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
ribosomal protein L24, Arabidopsis thaliana,
EMBL:AC006282
Length = 163
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 116 RDAPKEDNSLNTLAESAKKTIEELR-EKVESALAPETVKKNF 238
RDA +E +L + E KKT +E + +KVE A + VK NF
Sbjct: 104 RDAAREA-ALREIKERIKKTKDEKKAKKVEFASKQQKVKANF 144
>At5g58720.1 68418.m07356 PRLI-interacting factor, putative similar
to PRLI-interacting factor N [Arabidopsis thaliana]
GI:11139276; contains Pfam profile PF01713: Smr domain
Length = 519
Score = 27.1 bits (57), Expect = 5.4
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +2
Query: 113 KRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAE 292
KR + + T ++ KK +EE R+ E E V KNF ++S E + ++ E
Sbjct: 12 KRSCAAKPSGDGTTSDGNKKDVEEERKDGEGKREIENVGKNF---IESLMEAFCSVSMEE 68
Query: 293 APKA 304
A A
Sbjct: 69 AMAA 72
>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
to wall-associated kinase 1 [Arabidopsis thaliana]
GI:3549626; expressed in leaves and stems & induced by
salicylic acid or INA (PMID:10380805)
Length = 741
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 225 TVSGAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNAC 100
T G + S+FSL+S+ F + + LLS+ G + C
Sbjct: 105 TALGYQLGSSFSLSSNNKFTLVGCNALSLLSTFGKQNYSTGC 146
>At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF)
identical to alpha-glucosidase I (GI:16506680,
GI:13398928) [Arabidopsis thaliana]
Length = 852
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 69 LSCWLSASPMCMHSSNEMLLKK 134
L CW+ + CMHS E+L K+
Sbjct: 603 LRCWMYLAADCMHSITELLGKE 624
>At4g30010.1 68417.m04270 expressed protein
Length = 90
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 155 AESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFY 271
+E K + EL ++S + ETVK + +D++NE Y
Sbjct: 8 SEIRGKKVTELPGYIKSTFSMETVKTSVKRGLDNYNEKY 46
>At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related contains
weak similarity to Pre-mRNA cleavage complex II protein
Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo sapiens]
Length = 808
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 46 IQNEQAADYLVGYLPRQC-ACIRQTRC 123
I+NE A L G LPRQC C + +C
Sbjct: 636 IRNESAISALYGDLPRQCTTCGLRFKC 662
>At3g62820.1 68416.m07058 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q43867, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 194
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 210 KADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLAR 88
K + S+ ++VFF LS + L S S + NAC++ R
Sbjct: 2 KTPMSSSITFALVFFLLSLNPTSSLPSKRESYVQNACSVTR 42
>At3g28100.1 68416.m03507 nodulin MtN21 family protein similar to
MtN21 [Medicago truncatula] GI:2598575
Length = 353
Score = 26.2 bits (55), Expect = 9.4
Identities = 27/98 (27%), Positives = 44/98 (44%)
Frame = -2
Query: 294 ASAGFRFL*NSLKLSTIVPKFFLTVSGAKADSTFSLNSSIVFFALSASVFRLLSSLGASR 115
A G+ +L SL L + FF S + + S+ S I L S++ + +G
Sbjct: 44 AFLGYSYLLASLLL--LPSLFFTDRSRSLPPLSLSILSKIGLLGLLGSMYVITGYIGIEY 101
Query: 114 LTNACTLARQIANKIISSLFILDI*ERLHGIGYKNHHS 1
++ TLA I+N + FIL I R+ + +K S
Sbjct: 102 --SSPTLASAISNITPALTFILAIIFRMEKVSFKERSS 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,985,919
Number of Sequences: 28952
Number of extensions: 147540
Number of successful extensions: 472
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -