Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_D04
(390 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm... 76 3e-13
UniRef50_Q9UUI1 Cluster: U6 snRNA-associated Sm-like protein LSm... 54 1e-06
UniRef50_Q00UL7 Cluster: Putative Sm protein F; n=1; Ostreococcu... 49 4e-05
UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm... 47 1e-04
UniRef50_Q5K712 Cluster: U6 snRNA-associated sm-like protein lsm... 46 2e-04
UniRef50_A1CE19 Cluster: LSM domain protein; n=3; Trichocomaceae... 44 8e-04
UniRef50_Q4N728 Cluster: U6 small nuclear ribonucleoprotein, put... 42 0.004
UniRef50_Q61402 Cluster: Gcap1 protein; n=1; Mus musculus|Rep: G... 40 0.013
UniRef50_A7ARJ0 Cluster: Small nuclear ribonucleoprotein F, puta... 38 0.052
UniRef50_Q9SUM2 Cluster: Probable small nuclear ribonucleoprotei... 37 0.12
UniRef50_A7F5M4 Cluster: Putative uncharacterized protein; n=4; ... 36 0.21
UniRef50_UPI00015533A8 Cluster: PREDICTED: similar to Snrpf prot... 36 0.37
UniRef50_Q2R066 Cluster: Small nuclear ribonucleoprotein F, puta... 36 0.37
UniRef50_Q010Y9 Cluster: Ypt/Rab GTPase activating protein; n=13... 36 0.37
UniRef50_P62306 Cluster: Small nuclear ribonucleoprotein F; n=20... 36 0.37
UniRef50_Q75BR7 Cluster: ACR204Cp; n=2; Saccharomycetales|Rep: A... 35 0.49
UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albica... 35 0.49
UniRef50_UPI0000499412 Cluster: U6 snRNA-associated Sm-like prot... 33 1.5
UniRef50_A2EH12 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 32 3.4
UniRef50_Q6CPH1 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 32 3.4
UniRef50_A7CXH6 Cluster: Putative uncharacterized protein precur... 32 4.5
UniRef50_A6H5H6 Cluster: Putative uncharacterized protein; n=1; ... 32 4.5
UniRef50_Q06406 Cluster: U6 snRNA-associated Sm-like protein LSm... 32 4.5
UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2; ... 31 6.0
UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4; Th... 31 6.0
UniRef50_P34659 Cluster: Probable small nuclear ribonucleoprotei... 31 6.0
UniRef50_Q24297 Cluster: Small nuclear ribonucleoprotein F; n=7;... 31 7.9
>UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=22; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm6 - Homo sapiens (Human)
Length = 80
Score = 75.8 bits (178), Expect = 3e-13
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +2
Query: 86 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRI 190
EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR+
Sbjct: 46 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80
Score = 52.4 bits (120), Expect = 3e-06
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +1
Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
VKLNSGVDYRGVL CLDGYMNIAL
Sbjct: 22 VKLNSGVDYRGVLACLDGYMNIAL 45
>UniRef50_Q9UUI1 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=33; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm6 - Schizosaccharomyces pombe (Fission yeast)
Length = 75
Score = 54.0 bits (124), Expect = 1e-06
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = +2
Query: 86 EQTEEYVNGQLKNKYGDAFIRGNNVLYIS 172
E+TEEYVNG+ N YGDAFIRGNNVLY+S
Sbjct: 43 ERTEEYVNGKKTNVYGDAFIRGNNVLYVS 71
Score = 47.2 bits (107), Expect = 1e-04
Identities = 19/32 (59%), Positives = 28/32 (87%), Gaps = 1/32 (3%)
Frame = +1
Query: 1 RRXSVKLNSGVDYRGVLXCLDGYMNIAL-RTD 93
++ ++L+SGVDY+G+L CLDGYMN+AL RT+
Sbjct: 15 KKVLIRLSSGVDYKGILSCLDGYMNLALERTE 46
>UniRef50_Q00UL7 Cluster: Putative Sm protein F; n=1; Ostreococcus
tauri|Rep: Putative Sm protein F - Ostreococcus tauri
Length = 173
Score = 48.8 bits (111), Expect = 4e-05
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +2
Query: 95 EEYVNGQLKNKYGDAFIRGNN 157
+EYVNGQLKNKYGDAFIRGNN
Sbjct: 131 QEYVNGQLKNKYGDAFIRGNN 151
Score = 38.7 bits (86), Expect = 0.040
Identities = 20/32 (62%), Positives = 22/32 (68%), Gaps = 8/32 (25%)
Frame = +1
Query: 13 VKLNSGVDYRG--------VLXCLDGYMNIAL 84
V+LNSG DYRG VL CLDGYMNIA+
Sbjct: 69 VRLNSGADYRGARSRRSIGVLACLDGYMNIAM 100
>UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=2; Pezizomycotina|Rep: U6 snRNA-associated Sm-like
protein LSm6 - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 83
Score = 47.2 bits (107), Expect = 1e-04
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +2
Query: 86 EQTEEYVNGQLKNKYGDAFIRGNNVLYIS 172
E+ EE+V GQ K YGDAF+RGNNV+YI+
Sbjct: 52 EKAEEWVAGQKKRSYGDAFVRGNNVMYIA 80
Score = 39.9 bits (89), Expect = 0.017
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +1
Query: 10 SVKLNSGVDYRGVLXCLDGYMNIAL 84
+VKLNSGV Y+G L +DGYMNIAL
Sbjct: 27 TVKLNSGVIYKGELQSVDGYMNIAL 51
>UniRef50_Q5K712 Cluster: U6 snRNA-associated sm-like protein lsm6,
putative; n=1; Filobasidiella neoformans|Rep: U6
snRNA-associated sm-like protein lsm6, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 88
Score = 46.4 bits (105), Expect = 2e-04
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +1
Query: 1 RRXSVKLNSGVDYRGVLXCLDGYMNIAL 84
+R V++ SGVDY G+L CLDGYMN+AL
Sbjct: 27 KRVKVRIGSGVDYTGLLTCLDGYMNVAL 54
Score = 38.7 bits (86), Expect = 0.040
Identities = 19/30 (63%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Frame = +2
Query: 86 EQTEEYVNGQLKNK-YGDAFIRGNNVLYIS 172
EQ EE+ G++K YGD F+RGNNVLYIS
Sbjct: 55 EQAEEWA-GEVKTAAYGDCFLRGNNVLYIS 83
>UniRef50_A1CE19 Cluster: LSM domain protein; n=3;
Trichocomaceae|Rep: LSM domain protein - Aspergillus
clavatus
Length = 108
Score = 44.4 bits (100), Expect = 8e-04
Identities = 18/29 (62%), Positives = 25/29 (86%)
Frame = +2
Query: 86 EQTEEYVNGQLKNKYGDAFIRGNNVLYIS 172
EQ++E+++G+L+ YGDAFIRGNN LY S
Sbjct: 49 EQSKEFMDGKLRRSYGDAFIRGNNGLYHS 77
Score = 40.3 bits (90), Expect = 0.013
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +1
Query: 10 SVKLNSGVDYRGVLXCLDGYMNIALRTDR 96
+VKLNSGV Y+G L +DGYMNIAL +
Sbjct: 24 TVKLNSGVVYKGELQSVDGYMNIALEQSK 52
>UniRef50_Q4N728 Cluster: U6 small nuclear ribonucleoprotein,
putative; n=3; Aconoidasida|Rep: U6 small nuclear
ribonucleoprotein, putative - Theileria parva
Length = 77
Score = 41.9 bits (94), Expect = 0.004
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +2
Query: 86 EQTEEYVNGQLKNKYGDAFIRGNNVLYIS 172
E T E+++G + YGDAFIRGNNV YIS
Sbjct: 44 ENTCEFLDGVMVKSYGDAFIRGNNVYYIS 72
Score = 31.9 bits (69), Expect = 4.5
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
VKLN+G D++G L LD MN+A+
Sbjct: 20 VKLNNGSDFKGTLASLDERMNLAM 43
>UniRef50_Q61402 Cluster: Gcap1 protein; n=1; Mus musculus|Rep:
Gcap1 protein - Mus musculus (Mouse)
Length = 85
Score = 40.3 bits (90), Expect = 0.013
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = -3
Query: 178 LCTYIQNIIPTYECIAIFIFQLSVYIFLGLFARLYSCIHLNTXEHLY 38
LC Y+ + Y CI+I+ LS+Y+ + ++ +Y+ IH +T H Y
Sbjct: 11 LCVYVYACVSLYICISIY---LSIYLSISIYLSIYTYIHTHTHTHTY 54
>UniRef50_A7ARJ0 Cluster: Small nuclear ribonucleoprotein F,
putative; n=1; Babesia bovis|Rep: Small nuclear
ribonucleoprotein F, putative - Babesia bovis
Length = 83
Score = 38.3 bits (85), Expect = 0.052
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2
Query: 86 EQTEEYVNGQLKNKYGDAFIRGNN 157
E T+EY +G+L YGD+FIRGNN
Sbjct: 44 ENTKEYCDGELVKAYGDSFIRGNN 67
Score = 34.3 bits (75), Expect = 0.85
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 13 VKLNSGVDYRGVLXCLDGYMNIALRTDRGIC 105
VKLN+G +RG+L LD MN+A+ + C
Sbjct: 20 VKLNNGTRFRGLLSSLDDRMNLAMENTKEYC 50
>UniRef50_Q9SUM2 Cluster: Probable small nuclear ribonucleoprotein
F; n=7; Magnoliophyta|Rep: Probable small nuclear
ribonucleoprotein F - Arabidopsis thaliana (Mouse-ear
cress)
Length = 88
Score = 37.1 bits (82), Expect = 0.12
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +2
Query: 92 TEEYVNGQLKNKYGDAFIRGNNVLYI 169
TEEY++GQL G+ IR NNVLY+
Sbjct: 48 TEEYIDGQLTGNLGEILIRCNNVLYV 73
>UniRef50_A7F5M4 Cluster: Putative uncharacterized protein; n=4;
Pezizomycotina|Rep: Putative uncharacterized protein -
Sclerotinia sclerotiorum 1980
Length = 95
Score = 36.3 bits (80), Expect = 0.21
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2
Query: 86 EQTEEYVNGQLKNKYGDAFIRGNN 157
E+ EE+V+G+ K +GDAF+RGNN
Sbjct: 52 EKCEEWVHGKKKTVHGDAFVRGNN 75
Score = 33.9 bits (74), Expect = 1.1
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +1
Query: 4 RXSVKLNSGVDYRGVLXCLDGYMNIAL 84
R VKLN+ + ++G L +DGYMNIAL
Sbjct: 25 RVIVKLNNSLVFKGELQSVDGYMNIAL 51
>UniRef50_UPI00015533A8 Cluster: PREDICTED: similar to Snrpf
protein; n=1; Mus musculus|Rep: PREDICTED: similar to
Snrpf protein - Mus musculus
Length = 209
Score = 35.5 bits (78), Expect = 0.37
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 92 TEEYVNGQLKNKYGDAFIRGNNVLYI 169
TEEY++G L G+ IR NNVLYI
Sbjct: 170 TEEYIDGALSGHLGEVLIRCNNVLYI 195
Score = 32.3 bits (70), Expect = 3.4
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
VKL G++Y+G L +DGYMN+ L
Sbjct: 144 VKLKWGMEYKGYLVSVDGYMNMQL 167
>UniRef50_Q2R066 Cluster: Small nuclear ribonucleoprotein F,
putative, expressed; n=5; Oryza sativa|Rep: Small
nuclear ribonucleoprotein F, putative, expressed - Oryza
sativa subsp. japonica (Rice)
Length = 86
Score = 35.5 bits (78), Expect = 0.37
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 92 TEEYVNGQLKNKYGDAFIRGNNVLYI 169
TEEY++GQ G+ IR NNVLY+
Sbjct: 48 TEEYIDGQFSGNLGEILIRCNNVLYL 73
>UniRef50_Q010Y9 Cluster: Ypt/Rab GTPase activating protein; n=13;
Eukaryota|Rep: Ypt/Rab GTPase activating protein -
Ostreococcus tauri
Length = 836
Score = 35.5 bits (78), Expect = 0.37
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 92 TEEYVNGQLKNKYGDAFIRGNNVLYI 169
TEEY++G+L+ G+ IR NNV+Y+
Sbjct: 804 TEEYIDGELQGALGEVLIRCNNVMYL 829
Score = 32.3 bits (70), Expect = 3.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 1 RRXSVKLNSGVDYRGVLXCLDGYMNIAL 84
+R +V+L G++YRG L D YMN+ L
Sbjct: 774 KRVAVRLKWGMEYRGFLVSTDAYMNLQL 801
>UniRef50_P62306 Cluster: Small nuclear ribonucleoprotein F; n=20;
Euteleostomi|Rep: Small nuclear ribonucleoprotein F -
Homo sapiens (Human)
Length = 86
Score = 35.5 bits (78), Expect = 0.37
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 92 TEEYVNGQLKNKYGDAFIRGNNVLYI 169
TEEY++G L G+ IR NNVLYI
Sbjct: 47 TEEYIDGALSGHLGEVLIRCNNVLYI 72
Score = 32.3 bits (70), Expect = 3.4
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
VKL G++Y+G L +DGYMN+ L
Sbjct: 21 VKLKWGMEYKGYLVSVDGYMNMQL 44
>UniRef50_Q75BR7 Cluster: ACR204Cp; n=2; Saccharomycetales|Rep:
ACR204Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 85
Score = 35.1 bits (77), Expect = 0.49
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +1
Query: 10 SVKLNSGVDYRGVLXCLDGYMNIAL 84
+VKL+SG+ Y+G L +DG+MN+AL
Sbjct: 26 NVKLHSGMLYQGTLESIDGFMNVAL 50
>UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albicans
CaLSM6; n=3; Ascomycota|Rep: Similar to CA5853|CaLSM6
Candida albicans CaLSM6 - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 84
Score = 35.1 bits (77), Expect = 0.49
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 86 EQTEEYVNGQLKNKYGDAFIRGNN 157
++T+E+V G YGD FIRGNN
Sbjct: 55 DETKEFVGGDQARNYGDVFIRGNN 78
Score = 34.3 bits (75), Expect = 0.85
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +1
Query: 10 SVKLNSGVDYRGVLXCLDGYMNIAL 84
+V+L++GV+Y G L +DGYMNI L
Sbjct: 30 TVRLHNGVEYLGNLQSIDGYMNIVL 54
>UniRef50_UPI0000499412 Cluster: U6 snRNA-associated Sm-like
protein; n=1; Entamoeba histolytica HM-1:IMSS|Rep: U6
snRNA-associated Sm-like protein - Entamoeba histolytica
HM-1:IMSS
Length = 71
Score = 33.5 bits (73), Expect = 1.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 86 EQTEEYVNGQLKNKYGDAFIRGNN 157
E EY+NG N+Y + FIRGNN
Sbjct: 47 ENAIEYINGNKDNEYPECFIRGNN 70
Score = 31.1 bits (67), Expect = 7.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 10 SVKLNSGVDYRGVLXCLDGYMNIAL 84
S+KLN G ++G + +DG MNI L
Sbjct: 22 SIKLNDGTIFKGKMTLIDGLMNIVL 46
>UniRef50_A2EH12 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 98
Score = 32.3 bits (70), Expect = 3.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 89 QTEEYVNGQLKNKYGDAFIRGNNVLYI 169
+T EYV G+ + GD IR NN+L+I
Sbjct: 49 ETSEYVGGKTEGVMGDVIIRCNNILHI 75
>UniRef50_Q6CPH1 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome E of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=2; Saccharomycetaceae|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 112
Score = 32.3 bits (70), Expect = 3.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 95 EEYVNGQLKNKYGDAFIRGNNVLYI 169
EE +N K GD FIR NNVLY+
Sbjct: 53 EEIINDVSSGKVGDIFIRCNNVLYV 77
>UniRef50_A7CXH6 Cluster: Putative uncharacterized protein
precursor; n=1; Opitutaceae bacterium TAV2|Rep: Putative
uncharacterized protein precursor - Opitutaceae
bacterium TAV2
Length = 435
Score = 31.9 bits (69), Expect = 4.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 86 EQTEEYVNGQLKNKYGDAFIRGNN 157
EQT E + GQL + G+AFI+G N
Sbjct: 369 EQTREQITGQLGQEGGEAFIKGQN 392
>UniRef50_A6H5H6 Cluster: Putative uncharacterized protein; n=1;
Cycas taitungensis|Rep: Putative uncharacterized protein
- Cycas taitungensis (Prince sago) (Cycas taiwaniana)
Length = 78
Score = 31.9 bits (69), Expect = 4.5
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = -3
Query: 148 TYECIAIFI---FQLSVYIFLGLFARLYSCIHL 59
TY I+I++ QLS++IF+ L+ R Y CI++
Sbjct: 7 TYSSISIYLDHNTQLSIFIFMYLYVRTYLCIYM 39
>UniRef50_Q06406 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=4; Saccharomycetaceae|Rep: U6 snRNA-associated Sm-like
protein LSm6 - Saccharomyces cerevisiae (Baker's yeast)
Length = 123
Score = 31.9 bits (69), Expect = 4.5
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1
Query: 10 SVKLNSGVDYRGVLXCLDGYMNIAL 84
+VKL SG+ Y G L +DG+MN+AL
Sbjct: 62 NVKLASGLLYSGRLESIDGFMNVAL 86
Score = 31.9 bits (69), Expect = 4.5
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +2
Query: 92 TEEYV--NGQLKNKYG-DAFIRGNNVLYISTQK 181
TE Y N +L NK+ D F+RG V+YIS QK
Sbjct: 90 TEHYESNNNKLLNKFNSDVFLRGTQVMYISEQK 122
>UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 67
Score = 31.5 bits (68), Expect = 6.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 95 EEYVNGQLKNKYGDAFIRGNNVLYIS 172
EE+++ K G FIR NNVLYIS
Sbjct: 22 EEWIDNTKKGTLGKVFIRCNNVLYIS 47
>UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4;
Thermoplasmatales|Rep: Putative snRNP Sm-like protein -
Thermoplasma acidophilum
Length = 83
Score = 31.5 bits (68), Expect = 6.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 86 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQK 181
+ E +NG+ K Y +RG+NV+++S K
Sbjct: 48 QNASEIINGENKGVYDRVLVRGDNVIFVSPSK 79
>UniRef50_P34659 Cluster: Probable small nuclear ribonucleoprotein
F; n=13; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein F - Caenorhabditis elegans
Length = 85
Score = 31.5 bits (68), Expect = 6.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 95 EEYVNGQLKNKYGDAFIRGNNVLYI 169
EEY++G + G+ IR NNVLY+
Sbjct: 50 EEYIDGNSQGNLGEILIRCNNVLYV 74
Score = 31.1 bits (67), Expect = 7.9
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 16 KLNSGVDYRGVLXCLDGYMNIAL 84
KL G++Y+GVL +D YMN+ L
Sbjct: 24 KLKWGMEYKGVLVAVDSYMNLQL 46
>UniRef50_Q24297 Cluster: Small nuclear ribonucleoprotein F; n=7;
Fungi/Metazoa group|Rep: Small nuclear
ribonucleoprotein F - Drosophila melanogaster (Fruit
fly)
Length = 88
Score = 31.1 bits (67), Expect = 7.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
VKL G +Y+G L +DGYMN+ L
Sbjct: 23 VKLKWGQEYKGFLVSVDGYMNMQL 46
Score = 31.1 bits (67), Expect = 7.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 92 TEEYVNGQLKNKYGDAFIRGNNVLYI 169
TEE + G + G+ IR NNVLYI
Sbjct: 49 TEEVIEGSVTGNLGEVLIRCNNVLYI 74
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,767,679
Number of Sequences: 1657284
Number of extensions: 3650875
Number of successful extensions: 8520
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 8211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8495
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 16143318346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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