Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D04
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    54   8e-09
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac...    28   0.44 
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    26   2.4  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    25   3.1  
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    25   3.1  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    24   9.5  

>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 54.0 bits (124), Expect = 8e-09
 Identities = 23/29 (79%), Positives = 26/29 (89%)
 Frame = +2

Query: 86  EQTEEYVNGQLKNKYGDAFIRGNNVLYIS 172
           E+TEEYVNG+  N YGDAFIRGNNVLY+S
Sbjct: 43  ERTEEYVNGKKTNVYGDAFIRGNNVLYVS 71



 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 19/32 (59%), Positives = 28/32 (87%), Gaps = 1/32 (3%)
 Frame = +1

Query: 1   RRXSVKLNSGVDYRGVLXCLDGYMNIAL-RTD 93
           ++  ++L+SGVDY+G+L CLDGYMN+AL RT+
Sbjct: 15  KKVLIRLSSGVDYKGILSCLDGYMNLALERTE 46


>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
          Smf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 78

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
          V+L  G +Y+G L  +D YMN+ L
Sbjct: 22 VRLKWGQEYKGTLQSVDSYMNLQL 45


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 124 IFQLSVYIFLGLFARLYSCIHLNTXEHLYS 35
           I  + V    G F  LY+CI  NT  ++Y+
Sbjct: 312 ILMMLVSTIYGNFKNLYNCIKRNTIGYIYN 341


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
 Frame = -3

Query: 145 YECIAIFIFQLSVYIFLGLF-----ARLYSC 68
           + CI+IFIF L    FL L       RLY C
Sbjct: 24  FACISIFIFALLALSFLSLLQPDTVQRLYQC 54


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
          Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 13 VKLNSGVDYRGVLXCLDGYMNIALR 87
          V+L +G  + G L   D YMN+ LR
Sbjct: 17 VELKNGETFNGHLENCDNYMNLTLR 41


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 113 VRLHIPRSVRKAIFMYPSKHXRTPL 39
           V LH  R V+  +F YP  H +  L
Sbjct: 405 VSLHFLREVQSLVFRYPLLHSKIHL 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 942,228
Number of Sequences: 5004
Number of extensions: 17145
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)