Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D04
         (390 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38094| Best HMM Match : LSM (HMM E-Value=0.0077)                    31   0.33 
SB_13435| Best HMM Match : Herpes_glycop (HMM E-Value=1.1)             30   0.77 
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_18657| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_40388| Best HMM Match : Kinesin (HMM E-Value=0)                     27   4.1  

>SB_38094| Best HMM Match : LSM (HMM E-Value=0.0077)
          Length = 43

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 13 VKLNSGVDYRGVLXCLDGYMNI 78
          +KL  G++Y+G L  +DGYMN+
Sbjct: 21 IKLKWGMEYKGYLVSVDGYMNL 42


>SB_13435| Best HMM Match : Herpes_glycop (HMM E-Value=1.1)
          Length = 319

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -3

Query: 181 LLCTYIQNIIPTYE-CIA-IFIFQLSVYIFLGLFARLYSCIHLNTXEHLY 38
           ++ + IQ++ P Y  CI  I +FQLS+YI + +F  + S   L      Y
Sbjct: 158 VVASVIQSLKPMYSNCILLILLFQLSLYIGVAIFCFMISLAQLGITAFTY 207


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 169 YIQNIIPTYECIAIFIFQLSVYIFLGLFARLYSCIHLNTXEHLYSQRRC 23
           YI ++  T  CI++ +++ S Y ++   A   SCI L+    LY   RC
Sbjct: 431 YIVHLAITISCISLLLYRASRYYYIVHLAITMSCILLS----LYRAIRC 475


>SB_18657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 177 CVLIYRTLFPRMNASPYLFFSCPFTYSSVCSQ 82
           C L  R  + R+N+ P   +S P+T   VC Q
Sbjct: 44  CHLNNRASYARVNSEPRHVYSRPYTLGDVCVQ 75


>SB_40388| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 500

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
 Frame = +2

Query: 80  PCEQTEEYVNGQLKNK-----YGDAFIRGNNVLY 166
           PCE+++ +VNG+L  +      GD  I GNN ++
Sbjct: 425 PCEESQTFVNGKLITECTPLTSGDRIILGNNHVF 458


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,709,629
Number of Sequences: 59808
Number of extensions: 124798
Number of successful extensions: 248
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)