Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_D04
(390 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 76 5e-14
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 76 5e-14
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 76 5e-14
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 76 5e-14
X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. 36 0.062
CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. 36 0.062
BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucle... 36 0.062
BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucle... 36 0.062
BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. 36 0.062
BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucle... 36 0.062
AK126213-1|BAC86488.1| 262|Homo sapiens protein ( Homo sapiens ... 30 2.3
AK128694-1|BAC87575.1| 291|Homo sapiens protein ( Homo sapiens ... 30 3.1
AK129846-1|BAC85241.1| 236|Homo sapiens protein ( Homo sapiens ... 29 5.3
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 75.8 bits (178), Expect = 5e-14
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +2
Query: 86 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRI 190
EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR+
Sbjct: 46 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +1
Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
VKLNSGVDYRGVL CLDGYMNIAL
Sbjct: 22 VKLNSGVDYRGVLACLDGYMNIAL 45
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 75.8 bits (178), Expect = 5e-14
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +2
Query: 86 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRI 190
EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR+
Sbjct: 46 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +1
Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
VKLNSGVDYRGVL CLDGYMNIAL
Sbjct: 22 VKLNSGVDYRGVLACLDGYMNIAL 45
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 75.8 bits (178), Expect = 5e-14
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +2
Query: 86 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRI 190
EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR+
Sbjct: 46 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +1
Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
VKLNSGVDYRGVL CLDGYMNIAL
Sbjct: 22 VKLNSGVDYRGVLACLDGYMNIAL 45
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 75.8 bits (178), Expect = 5e-14
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +2
Query: 86 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRI 190
EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR+
Sbjct: 46 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +1
Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
VKLNSGVDYRGVL CLDGYMNIAL
Sbjct: 22 VKLNSGVDYRGVLACLDGYMNIAL 45
>X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein.
Length = 86
Score = 35.5 bits (78), Expect = 0.062
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 92 TEEYVNGQLKNKYGDAFIRGNNVLYI 169
TEEY++G L G+ IR NNVLYI
Sbjct: 47 TEEYIDGALSGHLGEVLIRCNNVLYI 72
Score = 32.3 bits (70), Expect = 0.57
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
VKL G++Y+G L +DGYMN+ L
Sbjct: 21 VKLKWGMEYKGYLVSVDGYMNMQL 44
>CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein.
Length = 86
Score = 35.5 bits (78), Expect = 0.062
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 92 TEEYVNGQLKNKYGDAFIRGNNVLYI 169
TEEY++G L G+ IR NNVLYI
Sbjct: 47 TEEYIDGALSGHLGEVLIRCNNVLYI 72
Score = 32.3 bits (70), Expect = 0.57
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
VKL G++Y+G L +DGYMN+ L
Sbjct: 21 VKLKWGMEYKGYLVSVDGYMNMQL 44
>BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 35.5 bits (78), Expect = 0.062
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 92 TEEYVNGQLKNKYGDAFIRGNNVLYI 169
TEEY++G L G+ IR NNVLYI
Sbjct: 47 TEEYIDGALSGHLGEVLIRCNNVLYI 72
Score = 32.3 bits (70), Expect = 0.57
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
VKL G++Y+G L +DGYMN+ L
Sbjct: 21 VKLKWGMEYKGYLVSVDGYMNMQL 44
>BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 35.5 bits (78), Expect = 0.062
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 92 TEEYVNGQLKNKYGDAFIRGNNVLYI 169
TEEY++G L G+ IR NNVLYI
Sbjct: 47 TEEYIDGALSGHLGEVLIRCNNVLYI 72
Score = 32.3 bits (70), Expect = 0.57
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
VKL G++Y+G L +DGYMN+ L
Sbjct: 21 VKLKWGMEYKGYLVSVDGYMNMQL 44
>BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein.
Length = 86
Score = 35.5 bits (78), Expect = 0.062
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 92 TEEYVNGQLKNKYGDAFIRGNNVLYI 169
TEEY++G L G+ IR NNVLYI
Sbjct: 47 TEEYIDGALSGHLGEVLIRCNNVLYI 72
Score = 32.3 bits (70), Expect = 0.57
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
VKL G++Y+G L +DGYMN+ L
Sbjct: 21 VKLKWGMEYKGYLVSVDGYMNMQL 44
>BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 35.5 bits (78), Expect = 0.062
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 92 TEEYVNGQLKNKYGDAFIRGNNVLYI 169
TEEY++G L G+ IR NNVLYI
Sbjct: 47 TEEYIDGALSGHLGEVLIRCNNVLYI 72
Score = 32.3 bits (70), Expect = 0.57
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
VKL G++Y+G L +DGYMN+ L
Sbjct: 21 VKLKWGMEYKGYLVSVDGYMNMQL 44
>AK126213-1|BAC86488.1| 262|Homo sapiens protein ( Homo sapiens
cDNA FLJ44225 fis, clone THYMU3006168. ).
Length = 262
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -3
Query: 175 CTYIQNIIPTYECIAIFIFQLS-VYIFLGLFARLYSCIHLNTXEHLYSQRRCLI*RT 8
C YI I + C+ ++ + + VYI + + +Y+ IH++T H +S CL+ T
Sbjct: 184 CVYIHIYIGMHICVYSYMHRYTYVYIHIYICIHMYTHIHIHT--HNFSLTICLLMNT 238
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = -3
Query: 178 LCTYIQNIIPTYECIAIFIF---QLSVYIFLG----LFARLYSCIHLNTXEHLYS 35
+C + + I Y C+ I I+ + VY ++ ++ +Y CIH+ T H+++
Sbjct: 171 VCMCVCSCIHVYTCVYIHIYIGMHICVYSYMHRYTYVYIHIYICIHMYTHIHIHT 225
>AK128694-1|BAC87575.1| 291|Homo sapiens protein ( Homo sapiens
cDNA FLJ46861 fis, clone UTERU3011092. ).
Length = 291
Score = 29.9 bits (64), Expect = 3.1
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -3
Query: 178 LCTYIQNI--IPTYECIAIFIFQLSV--YIFLGLFARLYSCIHLNTXEHL 41
+CT++ I Y CI I +F ++ Y++ + Y C+H+ T H+
Sbjct: 127 ICTHMHTYMCIHMYTCIHICVFMCTMHAYVYSYVHMHAYVCVHMYTCVHM 176
>AK129846-1|BAC85241.1| 236|Homo sapiens protein ( Homo sapiens
cDNA FLJ26336 fis, clone HRT02842. ).
Length = 236
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 187 SSLLCTYIQNIIPTYECIAIFIFQLSVYIFLGLFARLYSCIHLNTXEHLYS 35
S CT++ + Y CI ++I +I++ + +YS IH+ T H Y+
Sbjct: 165 SVFTCTHVYICVFIYICIHVYI-----HIYICIHICVYSYIHMYTYIHTYT 210
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,228,414
Number of Sequences: 237096
Number of extensions: 531569
Number of successful extensions: 1031
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2698607930
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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