Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D04
         (390 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    64   4e-11
L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear ...    31   0.22 
AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical ...    28   2.7  
Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z81476-1|CAB03921.2|  431|Caenorhabditis elegans Hypothetical pr...    27   3.6  
AF038618-1|AAB92068.2|  386|Caenorhabditis elegans Hypothetical ...    27   3.6  
Z81476-10|CAN86579.1|  224|Caenorhabditis elegans Hypothetical p...    27   6.2  
AC006807-1|AAK84615.1|  130|Caenorhabditis elegans Hypothetical ...    27   6.2  

>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
           protein protein 6 protein.
          Length = 77

 Score = 63.7 bits (148), Expect = 4e-11
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +2

Query: 86  EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKR 184
           EQTEEY NGQL+NKYGDAFIRGNNVLYIST  +
Sbjct: 45  EQTEEYSNGQLQNKYGDAFIRGNNVLYISTSTK 77



 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 22/24 (91%), Positives = 23/24 (95%)
 Frame = +1

Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
          VKLNSGVDYRG+L CLDGYMNIAL
Sbjct: 21 VKLNSGVDYRGILACLDGYMNIAL 44


>L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 5 protein.
          Length = 85

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 95  EEYVNGQLKNKYGDAFIRGNNVLYI 169
           EEY++G  +   G+  IR NNVLY+
Sbjct: 50  EEYIDGNSQGNLGEILIRCNNVLYV 74



 Score = 31.1 bits (67), Expect = 0.29
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 16 KLNSGVDYRGVLXCLDGYMNIAL 84
          KL  G++Y+GVL  +D YMN+ L
Sbjct: 24 KLKWGMEYKGVLVAVDSYMNLQL 46


>AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical
           protein F15E6.9 protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 101 YVNGQLKNKYGDAFIRGNNVLYISTQKRR 187
           ++NG  K K G   ++ +N+L +S QKRR
Sbjct: 435 WLNGGEKEKSGVPSVKASNILKMSQQKRR 463


>Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical
           protein ZK262.10 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 184 SLLCTYIQNIIPTYECIAIFIFQLSVYIFLGLFAR 80
           +LLCT +  I+PT  C+  + +  S Y+  G F +
Sbjct: 51  NLLCTVVDLIVPT--CVIDYNYAFSYYVVDGYFEK 83


>Z81476-1|CAB03921.2|  431|Caenorhabditis elegans Hypothetical
           protein C25F9.1 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 163 QNIIPTYECIAIFIFQLSVYI-FLGLFARLYSCIHLNTXEHLYSQRRCLI 17
           +NII T E  AIF  +L ++I + G+F  +   + L+  +  Y     L+
Sbjct: 6   ENIIETAEVCAIFAAKLQIFISYFGVFLNILHFLMLSNKKLRYQSVNVLL 55


>AF038618-1|AAB92068.2|  386|Caenorhabditis elegans Hypothetical
           protein F42G8.9 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 241 KKLNFYSLKXNMYFR*LNSSLLCTYIQN 158
           +K+N + L  +++ R L +  LC YI+N
Sbjct: 138 RKMNCHKLHGSLFIRGLGNEKLCNYIKN 165


>Z81476-10|CAN86579.1|  224|Caenorhabditis elegans Hypothetical
           protein C25F9.13 protein.
          Length = 224

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 178 LCTYIQNIIPTYECIAIFIFQLSVYI-FLGLFARLYSCIHLNTXEHLYSQRRCLI 17
           +  + +NII T E  AIF  +L ++I + G+F  +   I L   +  Y     L+
Sbjct: 1   MSNFSKNIIKTAEVCAIFAAKLQIFISYFGVFLNILHFIILCNKKLRYQSVNVLL 55


>AC006807-1|AAK84615.1|  130|Caenorhabditis elegans Hypothetical
           protein Y58A7A.1 protein.
          Length = 130

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 177 CVLIYRTLFPRMNAS 133
           C L+YRTL+P +N+S
Sbjct: 111 CHLLYRTLYPNLNSS 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,114,700
Number of Sequences: 27780
Number of extensions: 94610
Number of successful extensions: 248
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)