Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D04
         (390 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, puta...    67   3e-12
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta...    66   8e-12
At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F, puta...    37   0.004

>At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F,
           putative / U6 snRNA-associated Sm-like protein, putative
           / Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
           snRNA-associated Sm-like protein LSm6 [Mus musculus]
          Length = 91

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 30/30 (100%), Positives = 30/30 (100%)
 Frame = +2

Query: 86  EQTEEYVNGQLKNKYGDAFIRGNNVLYIST 175
           EQTEEYVNGQLKNKYGDAFIRGNNVLYIST
Sbjct: 53  EQTEEYVNGQLKNKYGDAFIRGNNVLYIST 82



 Score = 49.6 bits (113), Expect = 7e-07
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +1

Query: 13  VKLNSGVDYRGVLXCLDGYMNIAL 84
           VKLNSGVDYRG L CLDGYMNIA+
Sbjct: 29  VKLNSGVDYRGTLTCLDGYMNIAM 52


>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
           putative / U6 snRNA-associated Sm-like protein, putative
           / Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
           snRNA-associated Sm-like protein LSm6 [Mus musculus]
          Length = 91

 Score = 66.1 bits (154), Expect = 8e-12
 Identities = 29/32 (90%), Positives = 30/32 (93%)
 Frame = +2

Query: 86  EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQK 181
           EQTEEYVNGQLKN YGDAF+RGNNVLYIST K
Sbjct: 53  EQTEEYVNGQLKNTYGDAFVRGNNVLYISTTK 84



 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 21/24 (87%), Positives = 23/24 (95%)
 Frame = +1

Query: 13  VKLNSGVDYRGVLXCLDGYMNIAL 84
           VKLNSGVDYRG+L CLDGYMNIA+
Sbjct: 29  VKLNSGVDYRGILTCLDGYMNIAM 52


>At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F,
           putative / snRNP-F, putative / Sm protein F, putative
           similar to SWISS-PROT:Q15356 small nuclear
           ribonucleoprotein F (snRNP-F, Sm protein F, Sm-F, SmF)
           [Mouse]
          Length = 88

 Score = 37.1 bits (82), Expect = 0.004
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +2

Query: 92  TEEYVNGQLKNKYGDAFIRGNNVLYI 169
           TEEY++GQL    G+  IR NNVLY+
Sbjct: 48  TEEYIDGQLTGNLGEILIRCNNVLYV 73



 Score = 30.3 bits (65), Expect = 0.48
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 13 VKLNSGVDYRGVLXCLDGYMNIAL 84
          VKL  G++Y+G L  +D YMN+ L
Sbjct: 22 VKLKWGMEYKGFLASVDSYMNLQL 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,595,664
Number of Sequences: 28952
Number of extensions: 78991
Number of successful extensions: 189
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)