Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C24
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   2.9  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   3.8  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    24   8.8  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    24   8.8  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    24   8.8  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    24   8.8  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 252  QNQMKRGVMPKMAILYFDLL-SFPLASVVPVKKNKRNAY 139
            QNQ++R    + ++L+F LL +F    VVP+  +++ +Y
Sbjct: 1758 QNQLRRRTFYRYSLLFFALLCTFVAMIVVPLVLDQKLSY 1796


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 43  VILNKYLGLVYTRFMALSQFLRRNLVSIV 129
           V+L+  LGL  TRF  L   L R   SIV
Sbjct: 652 VVLHALLGLTITRFTPLWPDLSRTAASIV 680


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = -1

Query: 348 KQSRLITEARHPQGLLVIQKFAYEEXLSVGNNQNQMKRGVMPKMAILYFDLLSFPLASVV 169
           ++   I E  H Q L+ I +   +  LSVG+ Q  +   + P     Y  L     A + 
Sbjct: 252 RKQESILEKIHAQRLIDIAESKRKPGLSVGDLQTYLNLNIAPPCINFYERLKQSKPALMA 311

Query: 168 PVKK 157
            VK+
Sbjct: 312 EVKR 315


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 34  SSFVILNKYLGLVYTRFMALSQFLRRNLVSIVFPTISITLIFLDWNHTR 180
           S+F+   KY  + +     +S+F+      IVFP + I   FL    T+
Sbjct: 363 SNFIDPQKYASIKFKNGNGVSKFMFLFTFGIVFPPLWILASFLPIPRTK 411


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 228 MPKMAILYFDLLSFPLASVVPVKKNKRNAYG 136
           + K+AI +FD     +A  +PVKK K +A G
Sbjct: 25  LSKLAISFFDQKKNKMADSIPVKK-KGSAKG 54


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 183 LASVVPVKKNKRNAYGGKDYAHKIP 109
           L  ++P  ++    YGG + A K+P
Sbjct: 636 LEGIIPALESSHAVYGGMELAKKLP 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,769,949
Number of Sequences: 5004
Number of extensions: 34423
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)