Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C24
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0269 - 42414345-42415328,42415419-42415551,42415939-424160...    30   0.71 
11_06_0696 + 26358713-26359779,26359826-26360110,26360177-263603...    28   2.9  
11_03_0162 - 10956997-10957323,10957390-10957568,10957823-109579...    28   3.8  
04_04_1377 - 33064906-33065607                                         27   8.7  
01_06_0279 + 28119902-28120058,28120602-28120960,28121314-281213...    27   8.7  

>01_07_0269 -
           42414345-42415328,42415419-42415551,42415939-42416007,
           42416459-42416672,42416785-42417040
          Length = 551

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +3

Query: 177 SQVESSTDQSIKWPSSASLLASFGFGCSRL 266
           S+++S+TD  +  PSS S+LAS GF C ++
Sbjct: 425 SKIDSNTDSLV--PSSISILASDGFSCPQV 452


>11_06_0696 +
           26358713-26359779,26359826-26360110,26360177-26360356,
           26360516-26360585,26361051-26361950
          Length = 833

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 291 KFAYEEXLSVGNNQNQMKRGVMPKMAILYFD 199
           K  YE+  SVGN Q+++K G+  K   L  D
Sbjct: 250 KIHYEKNESVGNLQSKLKAGIADKSFFLVLD 280


>11_03_0162 -
           10956997-10957323,10957390-10957568,10957823-10957922,
           10959333-10959397,10959480-10959572,10961062-10961607,
           10961627-10961678,10961753-10961884,10963049-10963210,
           10963532-10963582
          Length = 568

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 350 PNKADLSRKLVILKVCWSSRN 288
           PNK +LSR L+++   W +RN
Sbjct: 427 PNKTNLSRLLIVMWQLWKARN 447


>04_04_1377 - 33064906-33065607
          Length = 233

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 87  GVVTVPASESCEHSLSHHKHYAYFS*LEPHSQ 182
           G++  P +   E    HH H+ +   L+PH +
Sbjct: 166 GMMVAPTTHHRERQKHHHHHHHHHPHLQPHGE 197


>01_06_0279 +
           28119902-28120058,28120602-28120960,28121314-28121393,
           28121476-28121527,28121621-28121662,28121750-28121828,
           28121991-28122022,28122102-28122170,28122412-28122528,
           28122617-28122667,28123175-28123318
          Length = 393

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 331 DKSALFGGXVKEGDPPTWP 387
           DKSA FGG     DP TWP
Sbjct: 266 DKSA-FGGRGDRADPSTWP 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,235,146
Number of Sequences: 37544
Number of extensions: 212668
Number of successful extensions: 483
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)