Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C24
         (435 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033)                   28   2.9  
SB_14207| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0048)               28   2.9  
SB_38856| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_18979| Best HMM Match : Glucosaminidase (HMM E-Value=5.7)           28   2.9  
SB_8032| Best HMM Match : IBB (HMM E-Value=0.46)                       28   2.9  
SB_53694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_44880| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_41593| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08)        27   8.8  
SB_32914| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08)        27   8.8  

>SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033)
          Length = 757

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 348 KQSRLITEARHPQGLLVIQKFAYEEXLSV 262
           K+ RL+ + RH  G LV Q F YE+  S+
Sbjct: 233 KKLRLVIDLRHVNGYLVKQIFKYEDLRSL 261


>SB_14207| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0048)
          Length = 233

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -1

Query: 318 HPQGLLVIQKFAYEEXLSVGNN--QNQMKRGVMPKMAILYFDLLSFPLASVVPVKKNK 151
           +P+G L  Q    EE    G N  + + KR    ++  + F  L  P  S  PVKK K
Sbjct: 1   YPEGFLEAQAKKQEESAENGKNKGKGKRKRDEAHQVNRITFFFLEVPSPSKSPVKKKK 58


>SB_38856| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 348 KQSRLITEARHPQGLLVIQKFAYEEXLSV 262
           K+ RL+ + RH  G LV Q F YE+  S+
Sbjct: 102 KKLRLVIDLRHVNGYLVKQIFKYEDLRSL 130


>SB_18979| Best HMM Match : Glucosaminidase (HMM E-Value=5.7)
          Length = 297

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 348 KQSRLITEARHPQGLLVIQKFAYEEXLSV 262
           K+ RL+ + RH  G LV Q F YE+  S+
Sbjct: 191 KKLRLVIDLRHVNGYLVKQIFKYEDLRSL 219


>SB_8032| Best HMM Match : IBB (HMM E-Value=0.46)
          Length = 191

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -1

Query: 318 HPQGLLVIQKFAYEEXLSVGNN--QNQMKRGVMPKMAILYFDLLSFPLASVVPVKKNK 151
           +P+G L  Q    EE    G N  + + KR    ++  + F  L  P  S  PVKK K
Sbjct: 1   YPEGFLEAQAKKQEESAENGKNKGKGKRKRDEAHQVNRITFFFLEVPSPSKSPVKKKK 58


>SB_53694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 900

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 339 RLITEARHPQGLLVIQKFAYEEXLSV 262
           RL+ E RH  G LV Q F YE+  S+
Sbjct: 215 RLVIELRHVNGYLVKQIFKYEDLRSL 240


>SB_44880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 758

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 213 WPSSASLLASFGFGCSRL 266
           WPSS+S LA  GF C  L
Sbjct: 663 WPSSSSALAVIGFLCEML 680


>SB_41593| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08)
          Length = 319

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 361 KEGDPPTWP*MIIMYVCCK 417
           KEG+PP W   ++   CCK
Sbjct: 210 KEGEPPVWAQRLLGCWCCK 228


>SB_32914| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08)
          Length = 400

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 361 KEGDPPTWP*MIIMYVCCK 417
           KEG+PP W   ++   CCK
Sbjct: 291 KEGEPPVWAQRLLGCWCCK 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,158,543
Number of Sequences: 59808
Number of extensions: 245966
Number of successful extensions: 543
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)