Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C24
         (435 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18370.1 68416.m02336 C2 domain-containing protein contains P...    30   0.77 
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro...    28   3.1  
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro...    28   3.1  
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ...    27   4.1  
At5g08230.1 68418.m00965 PWWP domain-containing protein putative...    27   7.2  
At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transfera...    27   7.2  
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo...    27   7.2  
At4g30110.1 68417.m04281 ATPase E1-E2 type family protein / halo...    26   9.5  
At1g24340.1 68414.m03070 monooxygenase family protein similar to...    26   9.5  

>At3g18370.1 68416.m02336 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 815

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -2

Query: 161 RKISVMLMVGKTMLTRFRRRNCDNAINRVYTKPRYLFKITNDEKSIGNRANE 6
           RKI V ++ GK ++++ +   CD ++   Y K     KI N  + + N+  E
Sbjct: 481 RKIIVTVLAGKNLVSKDKSGKCDASVKLQYGKIIQKTKIVNAAECVWNQKFE 532


>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
           A-related contains 7 WD-40 repeats (PF00400) (1 below
           cutoff); similar to phytochrome A supressor spa1
           (GI:4809171) [Arabidopsis thaliana]
          Length = 794

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 129 LSHHKHYAYFS*LEPHSQVESSTDQSIK-WPSSASL 233
           + HHK  +Y   ++  + V SSTD ++K W  S S+
Sbjct: 659 IGHHKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSI 694


>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
           A-related contains 7 WD-40 repeats (PF00400) (1 below
           cutoff); similar to phytochrome A supressor spa1
           (GI:4809171) [Arabidopsis thaliana]
          Length = 794

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 129 LSHHKHYAYFS*LEPHSQVESSTDQSIK-WPSSASL 233
           + HHK  +Y   ++  + V SSTD ++K W  S S+
Sbjct: 659 IGHHKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSI 694


>At5g58040.1 68418.m07263 fip1 motif-containing protein contains Pfam
            profile PF05182: Fip1 motif
          Length = 1192

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 349  QTKQT-YHGSSSSSRFVGHPEICL*RXPVSREQPKPNEARSDAEDGHFI 206
            QTK+  Y G  SSS   GH +       +   + KP + R+ A+   FI
Sbjct: 918  QTKRRDYPGEESSSHHRGHEDFSARTDNIVNNEKKPRQERTGAKIDKFI 966


>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
           transcription factor (HUA2) - Arabidopsis thaliana,
           EMBL:AF116556
          Length = 1445

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 92  NAINRVYTKPRYLFKITNDEKS--IGNRANEC 3
           NA+    TKP+YL + ++D KS    +RA+ C
Sbjct: 123 NAVEPSVTKPKYLNQASSDGKSDKFSSRADPC 154


>At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 455

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 203 LIC*AFHLRVWFQSRKISVMLMVGKTMLTRFRRRNCDNAINRVYTKP 63
           +IC  F       +R +S + MVG  +  R  R   + AI R+  +P
Sbjct: 369 MICLPFRWDQMLNARFVSDVWMVGINLEDRVERNEIEGAIRRLLVEP 415


>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux pump protein from Geobacillus
           stearothermophilus [GI:16753175], cadmium resistance
           protein B from Staphylococcus aureus [GI:14020985];
           T20K24.13 has been merged with T20K24.12 per suggestion
           of Dr. Kristian Axelsen (axe@biobase.dk)
          Length = 1172

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = -1

Query: 270 LSVGNNQNQMKRGVMPKMAILYFDLLSFPLASVVPVKKN-KRNAYGGKDYAHKIPTQ 103
           +++ N + + K+  + K+   YFD+L     S VP+ +N  ++  G K+Y+  +P++
Sbjct: 1   MALQNKEEEKKK--VKKLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSR 55


>At4g30110.1 68417.m04281 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux pump protein from Geobacillus
           stearothermophilus [GI:16753175], cadmium resistance
           protein B from Staphylococcus aureus [GI:14020985]
          Length = 951

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 222 KMAILYFDLLSFPLASVVPVKKNKRNAYGG-KDYAHKIPTQ 103
           KM   YFD+L     S VP+ +N  N+  G K+++  +P++
Sbjct: 5   KMTKSYFDVLGICCTSEVPLIENILNSMDGVKEFSVIVPSR 45


>At1g24340.1 68414.m03070 monooxygenase family protein similar to
           polyketide hydroxylases from several bacterial species;
           contains Pfam:PF01360 [Monooxygenase]
          Length = 707

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = +3

Query: 81  VYGVVTVPASESCEHSLSHHKH---YAY-FS*LEPHSQVESSTDQSIKWPSSASLLASFG 248
           V  V   P+S S  H+L   +H     Y FS L+P  +VE   +   + PSS      F 
Sbjct: 20  VVSVAASPSSFSLPHNLCLRRHCRSLEYDFSFLKPLYKVERERNHPKQGPSSDFQGLRFS 79

Query: 249 FGCSRLTGXLHR 284
           F    + G + R
Sbjct: 80  FSTMAILGLIKR 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,255,352
Number of Sequences: 28952
Number of extensions: 179809
Number of successful extensions: 405
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)