Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_C21
(445 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P42677 Cluster: 40S ribosomal protein S27; n=74; Bilate... 140 9e-33
UniRef50_Q71UM5 Cluster: 40S ribosomal protein S27-like protein;... 140 9e-33
UniRef50_Q7RVN2 Cluster: 40S ribosomal protein S27; n=17; Fungi/... 130 2e-29
UniRef50_UPI00015B4FAB Cluster: PREDICTED: similar to myotubular... 125 4e-28
UniRef50_Q9AW40 Cluster: 40S ribosomal protein S27; n=1; Guillar... 86 4e-16
UniRef50_Q7R0I3 Cluster: Ribosomal protein S27; n=1; Giardia lam... 80 2e-14
UniRef50_UPI00005A14C9 Cluster: PREDICTED: similar to ribosomal ... 78 1e-13
UniRef50_Q6QI38 Cluster: LRRGT00170; n=2; Rattus norvegicus|Rep:... 75 5e-13
UniRef50_Q6QI46 Cluster: LRRGT00162; n=1; Rattus norvegicus|Rep:... 69 3e-11
UniRef50_Q3LW62 Cluster: Ribosomal protein S27; n=1; Bigelowiell... 66 2e-10
UniRef50_A2DGQ3 Cluster: Ribosomal protein S27, putative; n=4; T... 66 3e-10
UniRef50_Q8SS34 Cluster: 40S RIBOSOMAL PROTEIN S27; n=1; Encepha... 59 5e-08
UniRef50_Q22CK0 Cluster: Putative uncharacterized protein; n=1; ... 55 6e-07
UniRef50_Q8ZTY4 Cluster: 30S ribosomal protein S27e; n=10; Archa... 54 1e-06
UniRef50_Q5T4L4 Cluster: Ribosomal protein S27; n=30; Fungi/Meta... 51 1e-05
UniRef50_Q9YF01 Cluster: 30S ribosomal protein S27e; n=4; Thermo... 51 1e-05
UniRef50_A0RY94 Cluster: Ribosomal protein S27E; n=1; Cenarchaeu... 48 9e-05
UniRef50_Q9HRT7 Cluster: 30S ribosomal protein S27e; n=7; Euryar... 47 2e-04
UniRef50_Q8U474 Cluster: 30S ribosomal protein S27e; n=9; Euryar... 46 4e-04
UniRef50_Q8TY87 Cluster: 30S ribosomal protein S27e; n=13; Archa... 45 8e-04
UniRef50_A7DPS1 Cluster: Ribosomal protein S27E; n=1; Candidatus... 44 0.001
UniRef50_Q18KR1 Cluster: Ribosomal protein S27.eR; n=3; Halobact... 42 0.008
UniRef50_UPI00006C13E4 Cluster: PREDICTED: similar to ribosomal ... 40 0.018
UniRef50_Q9HIX2 Cluster: 30S ribosomal protein S27e; n=4; Thermo... 39 0.042
UniRef50_Q1PS48 Cluster: Cxpwmw06; n=1; Periplaneta americana|Re... 38 0.13
UniRef50_Q8TGN0 Cluster: Uncharacterized protein YKL156C-A; n=1;... 36 0.52
UniRef50_Q6QI40 Cluster: LRRGT00168; n=1; Rattus norvegicus|Rep:... 33 3.7
UniRef50_A7PBG8 Cluster: Chromosome chr16 scaffold_10, whole gen... 32 4.8
>UniRef50_P42677 Cluster: 40S ribosomal protein S27; n=74;
Bilateria|Rep: 40S ribosomal protein S27 - Homo sapiens
(Human)
Length = 84
Score = 140 bits (340), Expect = 9e-33
Identities = 60/70 (85%), Positives = 64/70 (91%)
Frame = +3
Query: 78 ERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXLT 257
E+RKHK KRLV PNSYFMDVKCPGCYKITTVFSHAQ VV+C GCST+LCQPTGG+A LT
Sbjct: 15 EKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLT 74
Query: 258 EGCSFRRKQH 287
EGCSFRRKQH
Sbjct: 75 EGCSFRRKQH 84
>UniRef50_Q71UM5 Cluster: 40S ribosomal protein S27-like protein;
n=100; Eukaryota|Rep: 40S ribosomal protein S27-like
protein - Homo sapiens (Human)
Length = 84
Score = 140 bits (340), Expect = 9e-33
Identities = 60/73 (82%), Positives = 65/73 (89%)
Frame = +3
Query: 69 LXSERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRA 248
L E++KHK KRLV PNSYFMDVKCPGCYKITTVFSHAQ VV+C GCST+LCQPTGG+A
Sbjct: 12 LEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKA 71
Query: 249 XLTEGCSFRRKQH 287
LTEGCSFRRKQH
Sbjct: 72 RLTEGCSFRRKQH 84
>UniRef50_Q7RVN2 Cluster: 40S ribosomal protein S27; n=17;
Fungi/Metazoa group|Rep: 40S ribosomal protein S27 -
Neurospora crassa
Length = 82
Score = 130 bits (313), Expect = 2e-29
Identities = 55/69 (79%), Positives = 61/69 (88%)
Frame = +3
Query: 75 SERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXL 254
SE RKHKLK LVP P S+FMDVKCPGC+ ITTVFSHAQ VV+C GC+T+LCQPTGG+A L
Sbjct: 14 SEARKHKLKTLVPAPRSFFMDVKCPGCFTITTVFSHAQTVVICQGCTTVLCQPTGGKARL 73
Query: 255 TEGCSFRRK 281
TEGCSFRRK
Sbjct: 74 TEGCSFRRK 82
>UniRef50_UPI00015B4FAB Cluster: PREDICTED: similar to myotubularin;
n=2; Apocrita|Rep: PREDICTED: similar to myotubularin -
Nasonia vitripennis
Length = 2064
Score = 125 bits (302), Expect = 4e-28
Identities = 54/68 (79%), Positives = 58/68 (85%)
Frame = +3
Query: 78 ERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXLT 257
E+RKHKLKRLV PNSYFMDVKCPGCY I T+FSHAQR V C GC TILC PTGG+A LT
Sbjct: 1994 EKRKHKLKRLVQKPNSYFMDVKCPGCYAIKTIFSHAQRPVECDGCRTILCTPTGGKARLT 2053
Query: 258 EGCSFRRK 281
EGCSFR+K
Sbjct: 2054 EGCSFRKK 2061
>UniRef50_Q9AW40 Cluster: 40S ribosomal protein S27; n=1; Guillardia
theta|Rep: 40S ribosomal protein S27 - Guillardia theta
(Cryptomonas phi)
Length = 81
Score = 85.8 bits (203), Expect = 4e-16
Identities = 33/67 (49%), Positives = 46/67 (68%)
Frame = +3
Query: 78 ERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXLT 257
E+ KHK KR++P+PNSYF+++ C C +FSH+Q +VC C+ LC PTGG+A L
Sbjct: 14 EKMKHKKKRIIPNPNSYFINIICKNCKNKNIIFSHSQTKIVCKNCALNLCYPTGGKARLI 73
Query: 258 EGCSFRR 278
+GC F R
Sbjct: 74 KGCKFSR 80
>UniRef50_Q7R0I3 Cluster: Ribosomal protein S27; n=1; Giardia
lamblia ATCC 50803|Rep: Ribosomal protein S27 - Giardia
lamblia ATCC 50803
Length = 81
Score = 80.2 bits (189), Expect = 2e-14
Identities = 33/60 (55%), Positives = 42/60 (70%)
Frame = +3
Query: 78 ERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXLT 257
E+RKHKLKRLV PNSYF+++KC GC I V+SHA V C GC++ + PTGG+ T
Sbjct: 13 EQRKHKLKRLVQGPNSYFLEIKCAGCQDIVVVYSHANTPVFCPGCTSQISIPTGGKCAFT 72
>UniRef50_UPI00005A14C9 Cluster: PREDICTED: similar to ribosomal
protein S27; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein S27 - Canis familiaris
Length = 115
Score = 77.8 bits (183), Expect = 1e-13
Identities = 36/54 (66%), Positives = 41/54 (75%)
Frame = +3
Query: 66 PLXSERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 227
P ++RKHK K LV PNSYFMD+KCPGCYKITTVFSHAQ VV+ A T+ C
Sbjct: 10 PSPEKKRKHKKKHLVQSPNSYFMDMKCPGCYKITTVFSHAQTVVLKA--QTLRC 61
>UniRef50_Q6QI38 Cluster: LRRGT00170; n=2; Rattus norvegicus|Rep:
LRRGT00170 - Rattus norvegicus (Rat)
Length = 496
Score = 75.4 bits (177), Expect = 5e-13
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +3
Query: 78 ERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPT 236
E+RKHK K LV P+SYFMDVK GCYK+ +FS VV+ GCST+ CQPT
Sbjct: 202 EKRKHKKKHLVQSPSSYFMDVKYLGCYKVPNIFSQEHTVVLYDGCSTVFCQPT 254
>UniRef50_Q6QI46 Cluster: LRRGT00162; n=1; Rattus norvegicus|Rep:
LRRGT00162 - Rattus norvegicus (Rat)
Length = 291
Score = 69.3 bits (162), Expect = 3e-11
Identities = 31/50 (62%), Positives = 37/50 (74%)
Frame = +3
Query: 51 ICCILPLXSERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVV 200
+C E+RKHK +RLV PNSYFMDV+CPG Y+ITTVFS AQ VV+
Sbjct: 172 VCLQTAAKEEQRKHKKRRLVQSPNSYFMDVQCPGRYEITTVFSRAQTVVL 221
>UniRef50_Q3LW62 Cluster: Ribosomal protein S27; n=1; Bigelowiella
natans|Rep: Ribosomal protein S27 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 93
Score = 66.5 bits (155), Expect = 2e-10
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = +3
Query: 75 SERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 245
+E +KHKLKRL+ PNS+++ KC C KI +FSH+ C CST+L +P+GG+
Sbjct: 17 TEAKKHKLKRLIQSPNSHYIATKCLKCKKINIIFSHSVFWKTCVDCSTLLTRPSGGK 73
>UniRef50_A2DGQ3 Cluster: Ribosomal protein S27, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S27,
putative - Trichomonas vaginalis G3
Length = 86
Score = 66.1 bits (154), Expect = 3e-10
Identities = 29/66 (43%), Positives = 37/66 (56%)
Frame = +3
Query: 78 ERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXLT 257
E +K K LVP+P S F+ ++CP C +TT FSH+ V C C T L PTGGR L
Sbjct: 16 EAHTNKKKTLVPNPRSEFLSLRCPSCTGLTTAFSHSNVPVFCKNCQTPLATPTGGRILLA 75
Query: 258 EGCSFR 275
+ R
Sbjct: 76 DQVEIR 81
>UniRef50_Q8SS34 Cluster: 40S RIBOSOMAL PROTEIN S27; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S27
- Encephalitozoon cuniculi
Length = 85
Score = 58.8 bits (136), Expect = 5e-08
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +3
Query: 90 HKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXLTEGCS 269
+K RL N +FM V+C GC T +SH+Q + C GC I+ +GGRA ++ C
Sbjct: 17 YKKDRLYREGNGFFMYVRCGGCRHTTCCYSHSQTNISCPGCGDIILTSSGGRAVVSPNCE 76
Query: 270 FRR 278
F++
Sbjct: 77 FKK 79
>UniRef50_Q22CK0 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 217
Score = 55.2 bits (127), Expect = 6e-07
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +3
Query: 78 ERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVV 200
E++K+K KRL+ PNSYFMDVKC C I +FS+AQ ++
Sbjct: 13 EKQKNKFKRLIQAPNSYFMDVKCAQCQNIQMIFSNAQSTII 53
Score = 37.1 bits (82), Expect = 0.17
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 210 CSTILCQPTGGRAXLTEGCSFRRK 281
CS ILC+PTGG+ + GC+F+ K
Sbjct: 193 CSAILCKPTGGKVQIQAGCAFKIK 216
>UniRef50_Q8ZTY4 Cluster: 30S ribosomal protein S27e; n=10;
Archaea|Rep: 30S ribosomal protein S27e - Pyrobaculum
aerophilum
Length = 67
Score = 54.0 bits (124), Expect = 1e-06
Identities = 24/52 (46%), Positives = 29/52 (55%)
Frame = +3
Query: 99 KRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXL 254
K L+P P S F+ +CP C FSHA VV C C +L PTGG+A L
Sbjct: 7 KVLIPQPKSKFIKTRCPDCGNEQITFSHAAMVVRCLVCGRVLAIPTGGKAKL 58
>UniRef50_Q5T4L4 Cluster: Ribosomal protein S27; n=30; Fungi/Metazoa
group|Rep: Ribosomal protein S27 - Homo sapiens (Human)
Length = 66
Score = 50.8 bits (116), Expect = 1e-05
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +3
Query: 78 ERRKHKLKRLVPHPNSYFMDVKCPG 152
E+RKHK KRLV PNSYFMDVKCPG
Sbjct: 15 EKRKHKKKRLVQSPNSYFMDVKCPG 39
>UniRef50_Q9YF01 Cluster: 30S ribosomal protein S27e; n=4;
Thermoprotei|Rep: 30S ribosomal protein S27e - Aeropyrum
pernix
Length = 73
Score = 50.8 bits (116), Expect = 1e-05
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = +3
Query: 99 KRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXL 254
K L+P P S F+ V CP C VFSH+ C C +L +PTGG+A +
Sbjct: 13 KVLIPRPRSRFLLVTCPKCGNRQVVFSHSTFRARCLNCGEVLVEPTGGKARI 64
>UniRef50_A0RY94 Cluster: Ribosomal protein S27E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein S27E - Cenarchaeum
symbiosum
Length = 224
Score = 48.0 bits (109), Expect = 9e-05
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +3
Query: 108 VPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXL 254
VP P S F+ ++C C T V+S A+ V C C +L +P GG+A L
Sbjct: 8 VPEPTSRFVKIECESCGSPTIVYSMAKSAVNCRFCGNLLAEPAGGKAVL 56
>UniRef50_Q9HRT7 Cluster: 30S ribosomal protein S27e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S27e -
Halobacterium salinarium (Halobacterium halobium)
Length = 57
Score = 47.2 bits (107), Expect = 2e-04
Identities = 21/42 (50%), Positives = 24/42 (57%)
Frame = +3
Query: 129 FMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXL 254
F +V+CP C TVF A V CA C T L +PTGG A L
Sbjct: 5 FYNVECPDCENEQTVFGKASTEVACAVCGTTLARPTGGEADL 46
>UniRef50_Q8U474 Cluster: 30S ribosomal protein S27e; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S27e -
Pyrococcus furiosus
Length = 63
Score = 46.0 bits (104), Expect = 4e-04
Identities = 21/49 (42%), Positives = 26/49 (53%)
Frame = +3
Query: 99 KRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 245
K ++P P S F+ VKC C VFSH V C C L +PTGG+
Sbjct: 3 KPIIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGK 51
>UniRef50_Q8TY87 Cluster: 30S ribosomal protein S27e; n=13;
Archaea|Rep: 30S ribosomal protein S27e - Methanopyrus
kandleri
Length = 73
Score = 44.8 bits (101), Expect = 8e-04
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +3
Query: 105 LVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXL 254
LVP P S F+ V+C C +F +A V C C L +PTGG+A +
Sbjct: 15 LVPQPRSRFLRVECVDCGNEQIIFGNASTEVKCHICGRTLAKPTGGKAKI 64
>UniRef50_A7DPS1 Cluster: Ribosomal protein S27E; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein
S27E - Candidatus Nitrosopumilus maritimus SCM1
Length = 65
Score = 44.4 bits (100), Expect = 0.001
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 108 VPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXL 254
+P P+S F V C C ++ V+SHA V C C + + TG +A +
Sbjct: 8 IPKPSSKFQKVNCNECGELQIVYSHASTQVACNSCGNAIAEATGSKAKI 56
>UniRef50_Q18KR1 Cluster: Ribosomal protein S27.eR; n=3;
Halobacteriaceae|Rep: Ribosomal protein S27.eR -
Haloquadratum walsbyi (strain DSM 16790)
Length = 75
Score = 41.5 bits (93), Expect = 0.008
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +3
Query: 129 FMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRA 248
F ++CP C +F A VV CA C T L PTGG A
Sbjct: 5 FYQLQCPDCNNEQVIFGKASTVVNCAVCGTTLATPTGGDA 44
>UniRef50_UPI00006C13E4 Cluster: PREDICTED: similar to ribosomal
protein S27; n=1; Homo sapiens|Rep: PREDICTED: similar
to ribosomal protein S27 - Homo sapiens
Length = 83
Score = 40.3 bits (90), Expect = 0.018
Identities = 22/50 (44%), Positives = 25/50 (50%)
Frame = +3
Query: 63 LPLXSERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGC 212
LP +RR KRLV + Y MDVKC GC K V+ VV C C
Sbjct: 7 LPHPLQRRSGNKKRLVQSQDCYVMDVKCSGCPKAAVVWEFC--VVDCPAC 54
>UniRef50_Q9HIX2 Cluster: 30S ribosomal protein S27e; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S27e -
Thermoplasma acidophilum
Length = 65
Score = 39.1 bits (87), Expect = 0.042
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 120 NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 242
N +F+ +KC C + VF+ V C C + +PTGG
Sbjct: 13 NGHFVKIKCRDCGNVQVVFARPSSTVTCNICGATIAKPTGG 53
>UniRef50_Q1PS48 Cluster: Cxpwmw06; n=1; Periplaneta americana|Rep:
Cxpwmw06 - Periplaneta americana (American cockroach)
Length = 54
Score = 37.5 bits (83), Expect = 0.13
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -3
Query: 287 MLFXXXXXXXXXXXXXXXXXTKDR*ASSADHHSLCVTKNCCNLVTARALNIHEI 126
MLF T+DR S +++LC+T++ C+LV RAL++H++
Sbjct: 1 MLFSSKRATFSESRPATCWLTQDRRTSCTHYYTLCMTEHRCDLVATRALHVHKV 54
>UniRef50_Q8TGN0 Cluster: Uncharacterized protein YKL156C-A; n=1;
Saccharomyces cerevisiae|Rep: Uncharacterized protein
YKL156C-A - Saccharomyces cerevisiae (Baker's yeast)
Length = 38
Score = 35.5 bits (78), Expect = 0.52
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = -1
Query: 154 QPGHLTSMK*ELGCGTSRLSLCFLLSD 74
QPGHLTS K +LG T+ +LCFL S+
Sbjct: 4 QPGHLTSRKYDLGPWTNVFNLCFLASE 30
>UniRef50_Q6QI40 Cluster: LRRGT00168; n=1; Rattus norvegicus|Rep:
LRRGT00168 - Rattus norvegicus (Rat)
Length = 109
Score = 32.7 bits (71), Expect = 3.7
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3
Query: 78 ERRKHKLKRLVPHPNSYFMD 137
E+RK+K KRLV PNSYF++
Sbjct: 20 EKRKYKKKRLVQSPNSYFVE 39
>UniRef50_A7PBG8 Cluster: Chromosome chr16 scaffold_10, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr16 scaffold_10, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 302
Score = 32.3 bits (70), Expect = 4.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 120 NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTG 239
N++ + CP C + + ++V CAGC I+ QP G
Sbjct: 239 NNFVIKGNCPACRR--QFIGYKNQIVRCAGCGNIVWQPKG 276
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 395,943,464
Number of Sequences: 1657284
Number of extensions: 6729832
Number of successful extensions: 13695
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 13411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13693
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22761518346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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