Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C21
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...   123   6e-29
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    52   3e-07
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     50   1e-06
08_01_0212 - 1680199-1680240,1680661-1680723,1681620-1681729,168...    29   1.7  
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345...    27   5.1  
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668...    27   5.1  
12_01_0045 - 354825-355504,355602-355776,355847-355927,357266-35...    27   9.0  
10_08_0872 - 21188197-21188247,21188361-21188453,21188549-211886...    27   9.0  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score =  123 bits (297), Expect = 6e-29
 Identities = 53/72 (73%), Positives = 59/72 (81%)
 Frame = +3

Query: 66  PLXSERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 245
           P   E+ KHK KRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LCQPTGG+
Sbjct: 13  PAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGK 72

Query: 246 AXLTEGCSFRRK 281
           A LTEGCSFRRK
Sbjct: 73  ARLTEGCSFRRK 84


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 22/40 (55%), Positives = 27/40 (67%)
 Frame = +3

Query: 66  PLXSERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 185
           P   E+ KHK KRLV  PNS+FMDVKC GC+ ++  F  A
Sbjct: 13  PAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = +3

Query: 66  PLXSERRKHKLKRLVPHPNSYFMDVKCPGCYKI 164
           P   E+ KHK KRLV  PNS+FMDVKC GC+ +
Sbjct: 13  PAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45


>08_01_0212 -
           1680199-1680240,1680661-1680723,1681620-1681729,
           1681869-1682101,1683000-1683092,1683895-1683974,
           1685148-1685156,1685243-1685245
          Length = 210

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +3

Query: 138 VKCPGCYKITTVFSHA---QRVVVCAGCSTILCQPTGGRAXLTEGCS 269
           V CPGC  +T V   A      ++C+GC T+L    G        C+
Sbjct: 86  VCCPGCNTLTAVNPSAVADMSELICSGCPTLLFYNRGASNIRCPSCN 132


>08_01_0392 -
           3454224-3454325,3454926-3455035,3455496-3455609,
           3455930-3456043,3456474-3456531
          Length = 165

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 183 AQRVVVCAGCSTILCQPTGGRAXLTEGCS 269
           AQ  +VC+GC  +L  P G  +     CS
Sbjct: 21  AQSQLVCSGCRNLLMYPAGATSVCCAVCS 49



 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 117 PNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 242
           PN     + C GC  +  ++      V CA CST+   P  G
Sbjct: 18  PNGAQSQLVCSGCRNLL-MYPAGATSVCCAVCSTVTAVPAPG 58


>03_02_0238 -
           6687334-6687421,6687456-6687512,6688266-6688351,
           6688410-6688589
          Length = 136

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 153 CYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXLT 257
           CYKI+ ++SH Q ++    C  IL +PTG R   T
Sbjct: 96  CYKISKIYSHGQSLL----CLDIL-RPTGRRIPKT 125


>12_01_0045 -
           354825-355504,355602-355776,355847-355927,357266-357498,
           357921-358104
          Length = 450

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 388 RWIHCSELEKYHSI 347
           RWIH SELE+ H+I
Sbjct: 416 RWIHHSELEEVHTI 429


>10_08_0872 -
           21188197-21188247,21188361-21188453,21188549-21188689,
           21188784-21188861,21188950-21189051,21189138-21189194,
           21189280-21189408,21189507-21189578,21189667-21189807,
           21189890-21190102
          Length = 358

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 137 IHEIRVRMWH*PLKLMFPPLRRQGKDATNQLRAAWLQL 24
           I E+R   W   +    PP +RQ KD  N ++A  L L
Sbjct: 28  IEEVRAAGWLDLMLASSPPRKRQTKDFANDVQADELDL 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,998,555
Number of Sequences: 37544
Number of extensions: 194650
Number of successful extensions: 393
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)