Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_C20
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 28 1.3
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 27 2.3
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.3
SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.9
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 26 3.9
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 5.2
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 6.9
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 9.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.1
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 25 9.1
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3
Query: 499 DKGSASSVSIAGTNKHXSFGSXVTYVXXXITDNTFXYEALTVPSL--GYTKIFGSLPHLE 326
D G++S +IA ++ + S +TY + D+ F L V G T +FG+L HLE
Sbjct: 70 DTGNSSD-NIAD-EENDNHKSTITYGTLIVGDDKFSNGKLKVAGKKRGPTDVFGALKHLE 127
Query: 325 KSK 317
K
Sbjct: 128 AKK 130
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +3
Query: 216 ELPSFATLDDLHLKPSRQKRNPASATQPCR---MDTCFDFSKCGSDPKIFVYPSDGTVSA 386
++PS TLD+ +KP +R P + MD FD DP+I +
Sbjct: 141 QMPSSMTLDNSEIKPVLNQRKNYLKPDPYQLPEMDVSFDKLGSSYDPRIMSQDELTQYVS 200
Query: 387 SYXKV 401
S+ K+
Sbjct: 201 SFTKI 205
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +3
Query: 168 YGNTSFKSDTCK-----SKLNELPSFATLDDLHLKPSRQKRN 278
Y N + SD S L++LP DDL L P +++RN
Sbjct: 158 YNNYDYTSDPSSPNYISSSLDQLPHLDDEDDLQLTPIKEERN 199
>SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 100
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 268 KNAILLLQHSLVVWIHVSTFLNVEVIQKFLCTQVMGLSVL 387
+N +LL L +H+ F + I KFLCT G ++L
Sbjct: 46 ENGEILLTSWLNRSVHIEIFDERKFIGKFLCTDREGAAIL 85
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 129 LLFMSCAFLLYCYYGNTSFKSDTC 200
LL+++CAFL Y GN +F+S C
Sbjct: 261 LLWLTCAFLSYMAQGN-AFRSLVC 283
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 105 MQAKRRYLLLFMSCAFLLYCYYGN-TSFKSDT 197
+Q + YL++ ++C +LL CY + SDT
Sbjct: 282 IQCQALYLIIRLTCLYLLSCYESEILNLSSDT 313
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 311 IHTTRLCCRSRIAFLSR-WFKVQIIKCCKRWQFI 213
+ TR+ +S +++R WF+V + C RW +
Sbjct: 354 LRQTRIIAKSSCDYITRYWFRV-LFNACMRWVLV 386
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 120 RYLLLFM-SCAFLLYCYYGNTSFKS 191
R+ L+F+ CA L YC YG SF++
Sbjct: 1718 RFSLIFLRKCALLWYCRYG-VSFET 1741
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.1
Identities = 22/87 (25%), Positives = 38/87 (43%)
Frame = +3
Query: 147 AFLLYCYYGNTSFKSDTCKSKLNELPSFATLDDLHLKPSRQKRNPASATQPCRMDTCFDF 326
AFL++ YGN+SF K LN+L + ++L + + A+ T +
Sbjct: 22 AFLVHQIYGNSSF----TKISLNQLEGRDSQEELQRRQEIRYYGRAAETGGTPTYYGYAT 77
Query: 327 SKCGSDPKIFVYPSDGTVSASYXKVLS 407
S+P IF + + + SY +S
Sbjct: 78 PTSSSEPSIFSESATPSETNSYSSPVS 104
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2
Query: 170 VVAIQKKSTRHEK 132
VVA+Q+ STRHEK
Sbjct: 904 VVALQRTSTRHEK 916
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,456
Number of Sequences: 5004
Number of extensions: 48998
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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