Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C20
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   3e-33
SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)             61   8e-10
SB_19936| Best HMM Match : fn3 (HMM E-Value=5.8e-20)                   31   1.0  
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019)                 28   7.2  
SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)         27   9.6  

>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score =  138 bits (334), Expect = 3e-33
 Identities = 63/128 (49%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
 Frame = +3

Query: 255 KPSRQKRNPASATQPCRMDTCFDFSKCGSDPKIFVYP--SDGTVSASYXKVLSVIXXSTY 428
           K S   +N       C M+TCFD +KC SD +I+VYP      +S +Y  ++ VI  S Y
Sbjct: 71  KDSISSKNVPPQPNKCTMETCFDKTKCLSDFRIYVYPVHPGAKLSTTYTNIIKVIKESRY 130

Query: 429 VTXDPNEXCLFVPAIDTLDADPLSSXHVSDVASRLSXLPYWXNGXNHLIFNLYAGTWPDY 608
            T  P E CLF+ AIDTLD D LS+ +V ++ +++  LPYW NG NH+IFNL+AGTWPDY
Sbjct: 131 YTEFPEEACLFITAIDTLDRDKLSADYVHNIYNKIRQLPYWKNGENHIIFNLFAGTWPDY 190

Query: 609 AEDSLGFD 632
           +ED +GFD
Sbjct: 191 SED-VGFD 197


>SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)
          Length = 497

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
 Frame = +3

Query: 252 LKPSRQKRNPASATQPCRMDTCFDFSKC----GSDPKIFVYPSD------------GTVS 383
           ++ ++  + P +    CRM +CFD  +C     S   ++VYP                +S
Sbjct: 51  IRVTKHMQFPQNTAPKCRMHSCFDIYRCRFNENSLISVYVYPYSTFLNEKGRTLNLKPIS 110

Query: 384 ASYXKVLSVIXXSTYVTXDPNEXCLFVPAIDTLDADPLSSXHVSDVASRLSXLPYW-XNG 560
             + ++L+ I  S+Y T D ++ C+ +P +D L+ + +    +   A  L+ L  W  +G
Sbjct: 111 VHFDEMLTAIKESSYYTDDKDKACIIIPPLDILNQNGMD---LKATAQALAALETWKYSG 167

Query: 561 XNHLIFNLYAGTWPDY 608
            NHLIFN+  G  PD+
Sbjct: 168 QNHLIFNMLPGGPPDF 183


>SB_19936| Best HMM Match : fn3 (HMM E-Value=5.8e-20)
          Length = 365

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 48  SLRLVWGETNFGIYFYGCEMQAKRRYLLLFMSCA--FLLYCYYGNTSFK 188
           +LR+ W  TN   + YG E+Q K  Y +    C   F+      NT ++
Sbjct: 70  ALRITWSPTNCSGHIYGVEIQTKVGYQMKMTQCTTEFIFSGLRPNTKYR 118


>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 532 RREATSDTCXDDKGSASSVSIAGTNKHXSF 443
           R   +S+TC D + + S+ S  GTN   S+
Sbjct: 237 RANTSSNTCADTRSNTSTSSYTGTNTSASY 266


>SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019)
          Length = 261

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 520 SLHVYRXYLIGXMVXIISYLIYMLAL 597
           S H Y  ++IG +V I+  ++Y +AL
Sbjct: 208 STHTYTFFIIGLLVVIVLAVVYFMAL 233


>SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)
          Length = 1008

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 362 PK*WDCQCFIXEGIISNXXXHI 427
           P  WDC CFI   + +N   HI
Sbjct: 91  PPTWDCVCFIIGTVYNNVNQHI 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,386,319
Number of Sequences: 59808
Number of extensions: 365623
Number of successful extensions: 937
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)