Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C20
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73425-6|CAB61014.1|  382|Caenorhabditis elegans Hypothetical pr...   109   2e-24
U94834-1|AAC47509.1|  378|Caenorhabditis elegans multiple exosto...   109   2e-24
AB241458-1|BAF48989.1|  382|Caenorhabditis elegans heparan sulfa...   109   2e-24
AC024753-8|AAF60455.1|  174|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>Z73425-6|CAB61014.1|  382|Caenorhabditis elegans Hypothetical
           protein F12F6.3 protein.
          Length = 382

 Score =  109 bits (262), Expect = 2e-24
 Identities = 52/127 (40%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
 Frame = +3

Query: 273 RNPASATQPCRMDTCFDFSKCGSDPKIFVYP-----SDGTVSASYXKVLSVIXXSTYVTX 437
           +NP    + C M  CFDFSKC +  K++++P      +   S  Y K+L     S + T 
Sbjct: 21  QNPTIERKQCTMSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTN 80

Query: 438 DPNEXCLFVPAIDTLDADPLSSXHVSDVASRLSXLP--YWXNGXNHLIFNLYAGTWPDYA 611
           DPNE C+F+  IDT D D  S  +V +V   +  L    W NG NHLIFN Y GT+PDY 
Sbjct: 81  DPNEACIFLLGIDTTDRDVRSQNYVKNVNDYIESLDPSVWNNGRNHLIFNFYHGTFPDYD 140

Query: 612 EDSLGFD 632
           + +L FD
Sbjct: 141 DHNLNFD 147


>U94834-1|AAC47509.1|  378|Caenorhabditis elegans multiple exostoses
           homolog 1 protein.
          Length = 378

 Score =  109 bits (262), Expect = 2e-24
 Identities = 52/127 (40%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
 Frame = +3

Query: 273 RNPASATQPCRMDTCFDFSKCGSDPKIFVYP-----SDGTVSASYXKVLSVIXXSTYVTX 437
           +NP    + C M  CFDFSKC +  K++++P      +   S  Y K+L     S + T 
Sbjct: 17  QNPTIERKQCTMSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTN 76

Query: 438 DPNEXCLFVPAIDTLDADPLSSXHVSDVASRLSXLP--YWXNGXNHLIFNLYAGTWPDYA 611
           DPNE C+F+  IDT D D  S  +V +V   +  L    W NG NHLIFN Y GT+PDY 
Sbjct: 77  DPNEACIFLLGIDTTDRDVRSQNYVKNVNDYIESLDPSVWNNGRNHLIFNFYHGTFPDYD 136

Query: 612 EDSLGFD 632
           + +L FD
Sbjct: 137 DHNLNFD 143


>AB241458-1|BAF48989.1|  382|Caenorhabditis elegans heparan sulfate
           polymerase protein.
          Length = 382

 Score =  109 bits (262), Expect = 2e-24
 Identities = 52/127 (40%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
 Frame = +3

Query: 273 RNPASATQPCRMDTCFDFSKCGSDPKIFVYP-----SDGTVSASYXKVLSVIXXSTYVTX 437
           +NP    + C M  CFDFSKC +  K++++P      +   S  Y K+L     S + T 
Sbjct: 21  QNPTIERKQCTMSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTN 80

Query: 438 DPNEXCLFVPAIDTLDADPLSSXHVSDVASRLSXLP--YWXNGXNHLIFNLYAGTWPDYA 611
           DPNE C+F+  IDT D D  S  +V +V   +  L    W NG NHLIFN Y GT+PDY 
Sbjct: 81  DPNEACIFLLGIDTTDRDVRSQNYVKNVNDYIESLDPSVWNNGRNHLIFNFYHGTFPDYD 140

Query: 612 EDSLGFD 632
           + +L FD
Sbjct: 141 DHNLNFD 147


>AC024753-8|AAF60455.1|  174|Caenorhabditis elegans Hypothetical
           protein Y23H5B.8 protein.
          Length = 174

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/70 (21%), Positives = 31/70 (44%)
 Frame = +3

Query: 126 LLLFMSCAFLLYCYYGNTSFKSDTCKSKLNELPSFATLDDLHLKPSRQKRNPASATQPCR 305
           +LLF+   F ++          + C +KLN++ +   L++L L+ ++  +N         
Sbjct: 4   ILLFLLSTFFVFSIVSGQQTNYENCLTKLNKMKNI--LNNLKLETTKHGKNVKIGNLETF 61

Query: 306 MDTCFDFSKC 335
              C D + C
Sbjct: 62  YHMCIDTTNC 71


>Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical
           protein F18E2.2 protein.
          Length = 622

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 256 NHLDKNAILLLQHSLVVWIHVSTFLNVEVIQKFL---CTQVMGLSVLHIXRY 402
           NHLD NA++ L + L  W    T L V   Q FL   CT ++ L    +  Y
Sbjct: 256 NHLDLNAVIWLDNYLQTW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHTY 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,732,437
Number of Sequences: 27780
Number of extensions: 278156
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)