Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C20
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24850.1 68416.m03117 hypothetical protein contains Pfam prof...    31   0.84 
At5g22390.1 68418.m02612 expressed protein                             30   1.5  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    28   4.5  
At3g60450.1 68416.m06761 expressed protein                             28   5.9  
At1g14830.1 68414.m01774 dynamin-like protein C (DL1C) nearly id...    28   5.9  
At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger) fa...    27   7.8  

>At3g24850.1 68416.m03117 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 359

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 174 NTSFKSDTCKS--KLNELPSFATLDDLHLKPSRQKRNPASATQPCRMDTCFDFSKCGSD 344
           N  F S T  S   LN+LP+ + ++D     S+ K    S+++PC     FD+    S+
Sbjct: 72  NGGFISFTSSSLIDLNQLPTDSEIEDPQTSDSQMKTLQNSSSEPCTSLVLFDYKTAESE 130


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 361 YTKIFGSLPHLEKSKHVSIRQGCVAEAGLRFCLDGLRCRS 242
           +T+IFG L H  +S H S  +     + L+ C +GL   S
Sbjct: 52  FTEIFGEL-HFRESSHSSYEKTSAENSSLQLCTEGLGSES 90


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory / CAF
            identical to RNA helicase/RNAseIII CAF protein
            GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +3

Query: 399  VLSVIXXSTYVTXDPNEXCLFVPAIDTLDADPLSSXHVSDVASRLSXLPYWXNGXNHLIF 578
            VL V    +    DP +  LFVP  D    +P+   +  ++  +++    W N       
Sbjct: 1067 VLDVDVEPSTTPWDPAKAYLFVPVTDNTSMEPIKGIN-WELVEKITKTTAWDNPLQRARP 1125

Query: 579  NLYAGT 596
            ++Y GT
Sbjct: 1126 DVYLGT 1131


>At3g60450.1 68416.m06761 expressed protein
          Length = 274

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 340 LPHLEKSK-HVSIRQGCVAEAGLRFCLDGLRCRSSSVAKDGNSFNFDLQVSDLKLVFP 170
           +P ++KSK  VSI      E GL   L+ +  R     KDG    FD  VSD++ +FP
Sbjct: 103 VPSIDKSKLKVSI------ELGLCEMLNSVAIRRELAPKDGK---FDFTVSDIETMFP 151


>At1g14830.1 68414.m01774 dynamin-like protein C (DL1C) nearly
           identical to dynamin-like protein C [Arabidopsis
           thaliana] GI:19569772
          Length = 614

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 246 LHLKPSRQKRNPASATQPCRMDTCFD--FSKCGSDPKIFVYPSDGTVSASYXKVL 404
           LHL+P ++K NP +A  P   D   D  F K GS+   ++     T+  S  K +
Sbjct: 496 LHLEPEKEKPNPRNAPAP-NADPYSDNHFRKIGSNVSAYINMVCDTLRNSLPKAV 549


>At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 325

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 397 FXYEALTVPSLGYTKIFGSLPHLEKSKHVS 308
           F YE  +   LG   +F  LPHL    H S
Sbjct: 188 FPYEEASSSQLGEVVLFHGLPHLRDEHHAS 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,699,669
Number of Sequences: 28952
Number of extensions: 245516
Number of successful extensions: 629
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)