Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_C17
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 161 3e-40
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 123 1e-28
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 105 2e-23
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 95 6e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 47 2e-05
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 38 0.005
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 36 0.038
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 32 0.47
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 30 1.9
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 30 1.9
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 29 3.3
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 28 5.8
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 28 7.6
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 161 bits (392), Expect = 3e-40
Identities = 70/157 (44%), Positives = 107/157 (68%)
Frame = +1
Query: 148 YKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVT 327
Y G +DKRT+ K+E+EA E + ++ +W LD + ER++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 328 IIDAPXHRXFIKNMITGTSQADCAVLIVXAGTGEFEXGISXNGQTREHALLAFTLGVKQL 507
++DAP H+ F+ NMI+G +QAD VL++ A GEFE G GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 508 IVGVNKMDSTEPPYSEPRFEEIXKEVSSYIKKIGYNP 618
++ VNKMD ++E R+EEI +++ ++KK+G+NP
Sbjct: 286 VILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 123 bits (297), Expect = 1e-28
Identities = 56/60 (93%), Positives = 57/60 (95%)
Frame = +1
Query: 208 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQ 387
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAP HR FIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 105 bits (253), Expect = 2e-23
Identities = 47/84 (55%), Positives = 62/84 (73%)
Frame = +1
Query: 280 IDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTGEFEXGISXNGQ 459
+D+ L +F+T +T++DAP H+ FI NMITG +QAD A+L+V A TGEFE G GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 460 TREHALLAFTLGVKQLIVGVNKMD 531
TREHA+L +LGV QLIV +NK+D
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLD 84
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 94.7 bits (225), Expect = 6e-20
Identities = 43/49 (87%), Positives = 45/49 (91%)
Frame = +1
Query: 64 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEM 210
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/110 (24%), Positives = 50/110 (45%)
Frame = +1
Query: 97 VIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGI 276
+I H D+GK+T T L+ G I +EA + K D ++ ER+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 277 TIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTG 426
++ ++ F + I+D P H+ F ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 38.3 bits (85), Expect = 0.005
Identities = 28/117 (23%), Positives = 50/117 (42%)
Frame = +1
Query: 247 KLKAERERGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTG 426
+ K E ER ITI + Y +D P H + M+ G + D A+L++
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100
Query: 427 EFEXGISXNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXKEVSSYI 597
QT EH + +K +++ NK+D + ++ ++++I K V I
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKDQYDQILKFVQGTI 151
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 35.9 bits (79), Expect = 0.029
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +1
Query: 88 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 267
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 268 RGITI 282
RGIT+
Sbjct: 1987 RGITV 1991
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 35.5 bits (78), Expect = 0.038
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Frame = +1
Query: 64 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 243
M K+ N+ VI HVD GKST T L+ K G I A + G+ F
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGII----------AAAKAGETRF-----T 56
Query: 244 DKLKAERERGITID---IALWKF--ETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLI 408
D K E++R ITI I+L+ E+ Y+T P R F+ N+I D + +
Sbjct: 57 DTRKDEQDRCITIKSTAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEV 116
Query: 409 VXA 417
A
Sbjct: 117 TAA 119
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Frame = -1
Query: 596 MYEDTS---XLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PXLE 444
+Y+D S L+S N L ++E IL TPT + + K C + P
Sbjct: 796 LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855
Query: 443 IPXSNSPVPAXT 408
+ NSP+P+ T
Sbjct: 856 VTNGNSPIPSGT 867
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 273 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVDQVTS 133
TT+T S YPS+ + +F + D T N TT V +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 273 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVDQVTS 133
TT+T S YPS+ + +F + D T N TT V +++
Sbjct: 437 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/87 (25%), Positives = 33/87 (37%)
Frame = +1
Query: 271 GITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTGEFEXGISX 450
GIT I + + + +D P H F G D +++V A
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177
Query: 451 NGQTREHALLAFTLGVKQLIVGVNKMD 531
QT+E A GV +I +NK+D
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKID 201
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Frame = +1
Query: 85 INIVVIGHVDSGKSTTTGHLIY----KCGGIDKRTIXKFEKE-----AXEMGKGSFKYAW 237
+ + V+G+VD+GKST G L + G ++ + + + E +G +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDN 289
Query: 238 VLDKLKAERERGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITG 378
+ + G +D A E+ K +T ID H ++K I G
Sbjct: 290 TGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 79 THINIVVIGHVDSGKSTTTGHLIY 150
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -3
Query: 282 DCDTTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVDQVTS 133
D TT+T S YPS+ + +F + D T N TT V +++
Sbjct: 344 DFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 273 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVDQVTS 133
TT+T S YPS+ + +F + D T N TT V +++
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 273 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVDQVTS 133
TT+T S YPS+ + +F + D T N TT V +++
Sbjct: 18 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 273 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVDQVTS 133
TT+T S YPS+ + +F + D T N TT V +++
Sbjct: 420 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 273 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVDQVTS 133
TT+T S YPS+ + +F + D T N TT V +++
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,135,768
Number of Sequences: 59808
Number of extensions: 332797
Number of successful extensions: 776
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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