Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C17
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   387   e-110
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   377   e-107
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   273   8e-76
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   240   7e-66
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.48 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   1.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   1.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.9  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  387 bits (952), Expect = e-110
 Identities = 185/196 (94%), Positives = 185/196 (94%)
 Frame = +1

Query: 64  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 243
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 244 DKLKAERERGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGT 423
           DKLKAERERGITIDIALWKFET KYYVTIIDAP HR FIKNMITGTSQADCAVLIV AGT
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120

Query: 424 GEFEXGISXNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXKEVSSYIKK 603
           GEFE GIS NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEI KEVSSYIKK
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKK 180

Query: 604 IGYNPAAVAFVPISGW 651
           IGYNPAAVAFVPISGW
Sbjct: 181 IGYNPAAVAFVPISGW 196


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  377 bits (927), Expect = e-107
 Identities = 180/196 (91%), Positives = 182/196 (92%)
 Frame = +1

Query: 64  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 243
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 244 DKLKAERERGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGT 423
           DKLKAERERGITIDIALWKFET KYYVTIIDAP HR FIKNMITGTSQADCAVLIV AG 
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGI 120

Query: 424 GEFEXGISXNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXKEVSSYIKK 603
           GEFE GIS NGQTREHALLAFTLGVKQLIVGVNKMD T+PPYSE RFEEI KEVSSYIKK
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKK 180

Query: 604 IGYNPAAVAFVPISGW 651
           IGYN A+VAFVPISGW
Sbjct: 181 IGYNTASVAFVPISGW 196


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  273 bits (670), Expect = 8e-76
 Identities = 131/139 (94%), Positives = 131/139 (94%)
 Frame = +1

Query: 235 WVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVX 414
           WVLDKLKAERERGITIDIALWKFET KYYVTIIDAP HR FIKNMITGTSQADCAVLIV 
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 415 AGTGEFEXGISXNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXKEVSSY 594
           AGTGEFE GIS NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEI KEVSSY
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 595 IKKIGYNPAAVAFVPISGW 651
           IKKIGYNPAAVAFVPISGW
Sbjct: 121 IKKIGYNPAAVAFVPISGW 139


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  240 bits (588), Expect = 7e-66
 Identities = 115/123 (93%), Positives = 115/123 (93%)
 Frame = +1

Query: 283 DIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTGEFEXGISXNGQT 462
           DIALWKFET KYYVTIIDAP HR FIKNMITGTSQADCAVLIV AGTGEFE GIS NGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 463 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXKEVSSYIKKIGYNPAAVAFVPI 642
           REHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEI KEVSSYIKKIGYNPAAVAFVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 643 SGW 651
           SGW
Sbjct: 121 SGW 123


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 76  KTHINIVVIGHVDSGKST 129
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 85  INIVVIGHVDSGKST 129
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 307 TXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLI 408
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 307 TXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLI 408
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 579 LXDFLKSGLTVWWFSGIH 526
           L  F++SG+T  W S I+
Sbjct: 56  LSHFIESGITAIWLSPIN 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,822
Number of Sequences: 438
Number of extensions: 3013
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)