Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_C17
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 330 5e-91
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 330 5e-91
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 330 5e-91
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 330 5e-91
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 184 6e-47
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 181 3e-46
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 94 8e-20
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 90 1e-18
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 50 2e-06
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 50 2e-06
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 47 1e-05
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 46 2e-05
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 46 3e-05
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 39 0.003
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 38 0.004
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 38 0.004
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 37 0.013
At5g13650.2 68418.m01585 elongation factor family protein contai... 36 0.031
At5g13650.1 68418.m01584 elongation factor family protein contai... 36 0.031
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 35 0.054
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 33 0.17
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 33 0.17
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 32 0.38
At5g46180.1 68418.m05680 ornithine aminotransferase, putative / ... 30 1.5
At3g20440.1 68416.m02588 glycoside hydrolase family 13 protein s... 28 4.7
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 27 8.2
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 330 bits (811), Expect = 5e-91
Identities = 156/196 (79%), Positives = 170/196 (86%)
Frame = +1
Query: 64 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 243
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR I +FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 244 DKLKAERERGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGT 423
DKLKAERERGITIDIALWKFET KYY T+IDAP HR FIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 424 GEFEXGISXNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXKEVSSYIKK 603
G FE GIS +GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++EI KEVSSY+KK
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKK 180
Query: 604 IGYNPAAVAFVPISGW 651
+GYNP + FVPISG+
Sbjct: 181 VGYNPDKIPFVPISGF 196
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 330 bits (811), Expect = 5e-91
Identities = 156/196 (79%), Positives = 170/196 (86%)
Frame = +1
Query: 64 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 243
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR I +FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 244 DKLKAERERGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGT 423
DKLKAERERGITIDIALWKFET KYY T+IDAP HR FIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 424 GEFEXGISXNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXKEVSSYIKK 603
G FE GIS +GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++EI KEVSSY+KK
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKK 180
Query: 604 IGYNPAAVAFVPISGW 651
+GYNP + FVPISG+
Sbjct: 181 VGYNPDKIPFVPISGF 196
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 330 bits (811), Expect = 5e-91
Identities = 156/196 (79%), Positives = 170/196 (86%)
Frame = +1
Query: 64 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 243
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR I +FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 244 DKLKAERERGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGT 423
DKLKAERERGITIDIALWKFET KYY T+IDAP HR FIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 424 GEFEXGISXNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXKEVSSYIKK 603
G FE GIS +GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++EI KEVSSY+KK
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKK 180
Query: 604 IGYNPAAVAFVPISGW 651
+GYNP + FVPISG+
Sbjct: 181 VGYNPDKIPFVPISGF 196
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 330 bits (811), Expect = 5e-91
Identities = 156/196 (79%), Positives = 170/196 (86%)
Frame = +1
Query: 64 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 243
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR I +FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 244 DKLKAERERGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGT 423
DKLKAERERGITIDIALWKFET KYY T+IDAP HR FIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 424 GEFEXGISXNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXKEVSSYIKK 603
G FE GIS +GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++EI KEVSSY+KK
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKK 180
Query: 604 IGYNPAAVAFVPISGW 651
+GYNP + FVPISG+
Sbjct: 181 VGYNPDKIPFVPISGF 196
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 184 bits (447), Expect = 6e-47
Identities = 89/193 (46%), Positives = 127/193 (65%), Gaps = 1/193 (0%)
Frame = +1
Query: 73 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKL 252
+K H+N+V IGHVD+GKST G +++ G +D R I K+EKEA + + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 253 KAERERGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTGEF 432
+ ER +G T+++ FET TI+DAP H+ ++ NMI+G SQAD VL++ A GEF
Sbjct: 158 EEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEF 217
Query: 433 EXGISXNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXKEVSSYIKKIGY 612
E G GQTREH LA TLGV +LIV VNKMD +S+ R++EI +++ ++K GY
Sbjct: 218 ETGYERGGQTREHVQLAKTLGVSKLIVVVNKMDDPTVNWSKERYDEIEQKMVPFLKASGY 277
Query: 613 NPAA-VAFVPISG 648
N V F+PISG
Sbjct: 278 NTKKDVVFLPISG 290
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 181 bits (441), Expect = 3e-46
Identities = 82/190 (43%), Positives = 129/190 (67%), Gaps = 1/190 (0%)
Frame = +1
Query: 79 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKA 258
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 259 ERERGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTGEFEX 438
ERERGIT+ +A+ F + +++V ++D+P H+ F+ NMI G +QAD A+L++ A G FE
Sbjct: 298 ERERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEA 357
Query: 439 GI-SXNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXKEVSSYIKKIGYN 615
G + GQTREHA + GV+Q+IV +NKMD YS+ RF+ I + V S+++ +
Sbjct: 358 GFDNLKGQTREHARVLRGFGVEQVIVAINKMDIV--GYSKERFDLIKQHVGSFLQSCRFK 415
Query: 616 PAAVAFVPIS 645
+++ ++P+S
Sbjct: 416 DSSLTWIPLS 425
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 93.9 bits (223), Expect = 8e-20
Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 1/179 (0%)
Frame = +1
Query: 61 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWV 240
K ++K H+NI IGHVD GK+T T L I K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE--------------- 116
Query: 241 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAG 420
+D ER RGITI+ A ++ET + +D P H ++KNMITG +Q D A+L+V
Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 176
Query: 421 TGEFEXGISXNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE-EIXKEVSSY 594
G QT+EH LLA +GV ++V +NK D + E E+ + +SSY
Sbjct: 177 DGPMP-------QTKEHILLAKQVGVPDMVVFLNKEDQVDDAELLELVELEVRELLSSY 228
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 90.2 bits (214), Expect = 1e-18
Identities = 60/177 (33%), Positives = 86/177 (48%)
Frame = +1
Query: 70 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 249
+ K H+N+ IGHVD GK+T T + K E GK +DK
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLTAAIT---------------KVLAEEGKAKAIAFDEIDK 107
Query: 250 LKAERERGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTGE 429
E++RGITI A ++ET K + +D P H ++KNMITG +Q D +L+V G
Sbjct: 108 APEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGP 167
Query: 430 FEXGISXNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXKEVSSYIK 600
QT+EH LLA +GV L+ +NK+D + P E +E+ S+ K
Sbjct: 168 MP-------QTKEHILLARQVGVPSLVCFLNKVDVVDDPELLELVEMELRELLSFYK 217
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 49.6 bits (113), Expect = 2e-06
Identities = 38/128 (29%), Positives = 57/128 (44%)
Frame = +1
Query: 88 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 267
NI + H+DSGK+T T +++ G I E E+ +G +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH---------EIHEV-RGRDGVGAKMDSMDLERE 116
Query: 268 RGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTGEFEXGIS 447
+GITI A Y V IID P H F + D A+L++ + G I+
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSIT 176
Query: 448 XNGQTREH 471
+ Q R +
Sbjct: 177 VDRQMRRY 184
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 49.6 bits (113), Expect = 2e-06
Identities = 38/128 (29%), Positives = 57/128 (44%)
Frame = +1
Query: 88 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 267
NI + H+DSGK+T T +++ G I E E+ +G +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH---------EIHEV-RGRDGVGAKMDSMDLERE 116
Query: 268 RGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTGEFEXGIS 447
+GITI A Y V IID P H F + D A+L++ + G I+
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSIT 176
Query: 448 XNGQTREH 471
+ Q R +
Sbjct: 177 VDRQMRRY 184
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 46.8 bits (106), Expect = 1e-05
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 4/174 (2%)
Frame = +1
Query: 88 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 267
N +I H+D GKST L+ G + R + K F LD + ERE
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDM-----------KEQF-----LDNMDLERE 131
Query: 268 RGITIDIAL----WKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTGEFE 435
RGITI + + +E + + +ID P H F + + + A+L+V A G
Sbjct: 132 RGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--- 188
Query: 436 XGISXNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXKEVSSYI 597
QT + LA + ++I +NK+D P +EP E++ +E+ I
Sbjct: 189 ----VEAQTLANVYLALENNL-EIIPVLNKIDL---PGAEP--EKVLREIEEVI 232
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 46.4 bits (105), Expect = 2e-05
Identities = 33/117 (28%), Positives = 54/117 (46%)
Frame = +1
Query: 76 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLK 255
K + NI ++ H+D+GK+TTT ++Y G + E+ +G+ W ++
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTGR---------NYKIGEVHEGTATMDW----ME 140
Query: 256 AERERGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTG 426
E+ERGITI A K+ + IID P H F + D A+ + + G
Sbjct: 141 QEQERGITITSAATTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG 197
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 45.6 bits (103), Expect = 3e-05
Identities = 34/113 (30%), Positives = 50/113 (44%)
Frame = +1
Query: 88 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 267
NI ++ HVD GK+T HLI GG GK F +D L E+
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG--------GVLHPRLAGKLRF-----MDYLDEEQR 57
Query: 268 RGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTG 426
R IT+ + + Y + +ID+P H F + T +D A+++V A G
Sbjct: 58 RAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 38.7 bits (86), Expect = 0.003
Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 9/169 (5%)
Frame = +1
Query: 52 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKY 231
D K EK N +I H+D GKST L+ G I K G G +Y
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK-------------GHGQPQY 102
Query: 232 AWVLDKLKAERERGITI---------DIALWKFETXKYYVTIIDAPXHRXFIKNMITGTS 384
LDKL +RERGIT+ + + E Y + +ID P H F + S
Sbjct: 103 ---LDKL--QRERGITVKAQTATMFYENKVEDQEASGYLLNLIDTPGHVDFSYEVSRSLS 157
Query: 385 QADCAVLIVXAGTGEFEXGISXNGQTREHALLAFTLGVKQLIVGVNKMD 531
A+L+V A G QT + LAF + ++ +NK+D
Sbjct: 158 ACQGALLVVDAAQG-------VQAQTVANFYLAFEANL-TIVPVINKID 198
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 38.3 bits (85), Expect = 0.004
Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 14/192 (7%)
Frame = +1
Query: 58 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK-RTIXKFEKE-AXEMGKGSFK- 228
P++ + INI IGHV GKST ++ G+ R + E+ ++G + K
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST----IVKAISGVQTVRFKNELERNITIKLGYANAKI 86
Query: 229 YAWVLDKLK---------AERERGITIDIALWKF--ETXKYYVTIIDAPXHRXFIKNMIT 375
Y DK + +E T D+ ++ T + +V+ +D P H + M+
Sbjct: 87 YKCEDDKCPRPMCYKSYGSGKEDNPTCDVPGFENCKMTLRRHVSCVDCPGHDILMATMLN 146
Query: 376 GTSQADCAVLIVXAGTGEFEXGISXNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 555
G + D A+L++ A QT EH + +K +I+ NK+D +
Sbjct: 147 GAAIVDGALLLIAANES------CPQPQTAEHLASVDMMRLKHIIILQNKIDLINEKAAT 200
Query: 556 PRFEEIXKEVSS 591
+ E I K +++
Sbjct: 201 EQHEAIQKFITN 212
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 38.3 bits (85), Expect = 0.004
Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 14/192 (7%)
Frame = +1
Query: 58 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK-RTIXKFEKE-AXEMGKGSFK- 228
P++ + INI IGHV GKST ++ G+ R + E+ ++G + K
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST----IVKAISGVQTVRFKNELERNITIKLGYANAKI 86
Query: 229 YAWVLDKLK---------AERERGITIDIALWKF--ETXKYYVTIIDAPXHRXFIKNMIT 375
Y DK + +E T D+ ++ T + +V+ +D P H + M+
Sbjct: 87 YKCEDDKCPRPMCYKSYGSGKEDNPTCDVPGFENCKMTLRRHVSCVDCPGHDILMATMLN 146
Query: 376 GTSQADCAVLIVXAGTGEFEXGISXNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 555
G + D A+L++ A QT EH + +K +I+ NK+D +
Sbjct: 147 GAAIVDGALLLIAANES------CPQPQTAEHLASVDMMRLKHIIILQNKIDLINEKAAT 200
Query: 556 PRFEEIXKEVSS 591
+ E I K +++
Sbjct: 201 EQHEAIQKFITN 212
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 36.7 bits (81), Expect = 0.013
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 9/187 (4%)
Frame = +1
Query: 58 PKMGKEKTHINIVVIGHVDSGKST----TTG-HLIYKCGGIDKRTIXKFEKEAXEMGKGS 222
P++ + INI IGHV GKST +G H + +++ K ++ K
Sbjct: 25 PEVISRQATINIGTIGHVAHGKSTIVKAVSGVHTVKFKSELERNITIKLGYANAKIYKCE 84
Query: 223 FKYAWVLDK-LKAERERGITIDIA---LWKFETXKYYVTIIDAPXHRXFIKNMITGTSQA 390
V K + +E + D++ +K + ++ V+ +D P H + M+ G +
Sbjct: 85 KCPRPVAYKSFGSGKEDNPSCDVSGHEKYKMKLLRH-VSFVDCPGHDILMATMLNGAAIM 143
Query: 391 DCAVLIVXAGTGEFEXGISXNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 570
D A+LI+ A QT EH + +K +I+ NK+D + + + E+
Sbjct: 144 DGALLIIAANE------TCPQPQTAEHLASVDMMHLKDIIIIQNKIDLIQENEAIKQHED 197
Query: 571 IXKEVSS 591
I + +++
Sbjct: 198 IQRFITN 204
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 35.5 bits (78), Expect = 0.031
Identities = 42/159 (26%), Positives = 60/159 (37%)
Frame = +1
Query: 88 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 267
NI ++ HVD GK+T ++ ++A ++D ERE
Sbjct: 85 NIAIVAHVDHGKTTLVDSML---------------RQAKVFRDNQVMQERIMDSNDLERE 129
Query: 268 RGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTGEFEXGIS 447
RGITI V IID P H F + + D +L+V + G
Sbjct: 130 RGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMP---- 185
Query: 448 XNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRF 564
QTR A G ++V VNK+D P + P F
Sbjct: 186 ---QTRFVLKKALEFG-HAVVVVVNKIDR---PSARPEF 217
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 35.5 bits (78), Expect = 0.031
Identities = 42/159 (26%), Positives = 60/159 (37%)
Frame = +1
Query: 88 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 267
NI ++ HVD GK+T ++ ++A ++D ERE
Sbjct: 84 NIAIVAHVDHGKTTLVDSML---------------RQAKVFRDNQVMQERIMDSNDLERE 128
Query: 268 RGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTGEFEXGIS 447
RGITI V IID P H F + + D +L+V + G
Sbjct: 129 RGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMP---- 184
Query: 448 XNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRF 564
QTR A G ++V VNK+D P + P F
Sbjct: 185 ---QTRFVLKKALEFG-HAVVVVVNKIDR---PSARPEF 216
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 34.7 bits (76), Expect = 0.054
Identities = 22/93 (23%), Positives = 42/93 (45%)
Frame = +1
Query: 319 YVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTGEFEXGISXNGQTREHALLAFTLGV 498
+V+ +D P H + M+ G + D A+L++ A QT EH + +
Sbjct: 122 HVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE------TCPQPQTSEHLAAVEIMQL 175
Query: 499 KQLIVGVNKMDSTEPPYSEPRFEEIXKEVSSYI 597
K +I+ NK+D + + + E I K + + +
Sbjct: 176 KHIIILQNKIDLIQENVAINQHEAIQKFIMNTV 208
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 33.1 bits (72), Expect = 0.17
Identities = 34/118 (28%), Positives = 47/118 (39%), Gaps = 5/118 (4%)
Frame = +1
Query: 88 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 267
N+ ++GH+ GK+ L+ + + K EK KY D E+E
Sbjct: 140 NVALVGHLQHGKTVFMDMLVEQTHHMSTFNA-KNEKH--------MKYT---DTRVDEQE 187
Query: 268 RGITI-----DIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTG 426
R I+I + L + Y I+D P H F M AD AVLIV A G
Sbjct: 188 RNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 33.1 bits (72), Expect = 0.17
Identities = 34/118 (28%), Positives = 47/118 (39%), Gaps = 5/118 (4%)
Frame = +1
Query: 88 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 267
N+ ++GH+ GK+ L+ + + K EK KY D E+E
Sbjct: 140 NVALVGHLQHGKTVFMDMLVEQTHHMSTFNA-KNEKH--------MKYT---DTRVDEQE 187
Query: 268 RGITI-----DIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIVXAGTG 426
R I+I + L + Y I+D P H F M AD AVLIV A G
Sbjct: 188 RNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 31.9 bits (69), Expect = 0.38
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Frame = +1
Query: 88 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRT---IXKFEKEAXEMGKG-SFKYAWVLDKLK 255
N+ VI HVD GKST T L+ G I + + + A E +G + K + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
Query: 256 AERERGITIDIALWKFETXKYYVTIIDAPXHRXFIKNMITGTSQADCAVLIV 411
E ++ + +Y + +ID+P H F + D A+++V
Sbjct: 81 MTDE---SLKSFTGARDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
>At5g46180.1 68418.m05680 ornithine aminotransferase, putative /
ornithine--oxo-acid aminotransferase, putative similar
to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13)
(Ornithine--oxo-acid aminotransferase) [Aspergillus
nidulans] {Emericella nidulans}; contains Pfam profile
PF00202: aminotransferase, class III
Length = 475
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 487 TLGVKQLIVGVNKMDSTEPPYSEPRFEEIXKEVSSYIKKIGYNPAAVAFVPISG 648
T GV++ G+ + +S PP S R E+ E S++ Y+P V F +G
Sbjct: 18 TAGVRRSYGGLPQSNSKSPPSSSQRLMELESEFSAH----NYHPVPVVFSRANG 67
>At3g20440.1 68416.m02588 glycoside hydrolase family 13 protein
similar to 1,4-alpha-glucan branching enzyme [Solanum
tuberosum] GI:1621012, 1,4-alpha-glucan branching enzyme
(EC 2.4.1.18) from [Homo sapiens] SP|Q04446, {Solanum
tuberosum} SP|P30924; contains Pfam profiles: PF00128
Alpha amylase catalytic domain, PF02922 Isoamylase
N-terminal domain
Length = 777
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +1
Query: 550 SEPR---FEEIXKEVSSYIKKIGYNPAAVAFVP 639
SEP+ FEE K+V ++K+ GYN + VP
Sbjct: 257 SEPKVSTFEEFTKKVLPHVKRAGYNAIQLIGVP 289
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +1
Query: 328 IIDAPXHRXFIKNMITGTSQADCAVLIVXAGTGEFEXGISXNGQTREHALLAFTLGVKQL 507
+ID P H F G+S D A+L+V + + G+ QT E +L + +
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV-----DIKHGLEP--QTIE-SLNLLRMRNTEF 756
Query: 508 IVGVNKMD 531
I+ +NK+D
Sbjct: 757 IIALNKVD 764
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,805,438
Number of Sequences: 28952
Number of extensions: 230341
Number of successful extensions: 681
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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