Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C13
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    31   0.19 
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    28   1.0  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    26   4.1  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   7.2  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   9.5  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    25   9.5  

>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 531 KDKYCSFRFAVSNLMQAMNTTAPYXFASGSDSKNVLLILATTFPGISSTALNTXRTLSN 355
           +D + SF  + S +  A  + A    A  SD+     + +TTFP    +   T  TLSN
Sbjct: 183 EDPFASFNSSASAIAAASKSAAASASALSSDTGRSATMNSTTFPTAMKSQSTTKPTLSN 241


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 650 SARAXQAGTRGPSXCRSTPVRCNSTSSCPL 561
           +AR  +   RGP  CR+     +++S+CPL
Sbjct: 137 AARCSEPRKRGPRVCRTCHTDTHTSSTCPL 166


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
 Frame = +2

Query: 155 TVPSKLTEQMIFQLDEQTKHMLIXKYYDLXDAVIXELLGRKLSSRHRKDLXEVAERSGAP 334
           ++ S+  E   F ++E     ++ +     D V  EL G          + EV   + AP
Sbjct: 388 SIQSRALELSTFLVNEANVRFMVRELLSFLDNVSDELRGSTAQY-----ITEVTN-AFAP 441

Query: 335 LRCCRRQFDNVRXVFKAVEEMPGNVVA-NIRSTFL---LSDPLAXKYGAVVFIACMRFDT 502
            +  R  FD +  VFK+     GN V+ +  STFL    S P   +Y  V   A ++ D 
Sbjct: 442 NK--RWHFDTLLRVFKSA----GNFVSESTLSTFLRLIASAPELHEYAVVKLYAALKEDV 495

Query: 503 AKRKLQYLSF 532
           ++  L   +F
Sbjct: 496 SQEALTLSAF 505


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +2

Query: 515 LQYL--SFNDFYHCAQA--IMGSWTYCCTGPEYYD 607
           L YL  SFN +YH A+   ++G +  C   P+  D
Sbjct: 470 LNYLNKSFNSYYHAARCFLLLGQFLSCLPAPKVDD 504


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 65   AAKHLGTSVXLI--ASDVLDHYRTFALLERLLTVPSKLTEQMIFQ 193
            A + LG S   I  A DV++ YR  A+L  L+ +    T+  +F+
Sbjct: 1117 ADEELGWSAEQICLADDVINEYRRKAILCNLMALSLPFTQDKLFK 1161


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 365 VRXVFKAVEEMPGNVVANIRSTFLLSDPLAXKYGAVVF 478
           VR +F ++ ++  ++      TF  SDP   KY A  F
Sbjct: 214 VRGLFYSISQLRDSMTYLYDYTFYFSDPSPKKYAADAF 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,088
Number of Sequences: 5004
Number of extensions: 43514
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)