Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C13
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28943| Best HMM Match : FIBP (HMM E-Value=1.3e-06)                  91   5e-19
SB_45302| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_18246| Best HMM Match : SRF-TF (HMM E-Value=3.3)                    29   4.3  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_41982| Best HMM Match : Cys_rich_FGFR (HMM E-Value=4.8)             28   7.6  
SB_39225| Best HMM Match : NIF (HMM E-Value=0)                         28   7.6  

>SB_28943| Best HMM Match : FIBP (HMM E-Value=1.3e-06)
          Length = 247

 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 46/117 (39%), Positives = 67/117 (57%)
 Frame = +2

Query: 14  IEGCSSSEAVSTLHQRGAAKHLGTSVXLIASDVLDHYRTFALLERLLTVPSKLTEQMIFQ 193
           ++G S  EA +     G+    G +  +I SD  DHYR F +LE  L  P  L +Q++ Q
Sbjct: 110 LQGLSEIEASNHRITDGSLVKYGATHTIITSDTRDHYRLFNMLEHFLQNPLVLGKQLLVQ 169

Query: 194 LDEQTKHMLIXKYYDLXDAVIXELLGRKLSSRHRKDLXEVAERSGAPLRCCRRQFDN 364
           +    +  LI +YY     VI ELLG+KL+ R RKDL +V++++G  L+ CRRQ  N
Sbjct: 170 IPPNIQETLIERYYQFDKEVIRELLGKKLTGRQRKDLDDVSDKTGVTLKSCRRQVCN 226


>SB_45302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 95  LIASDVLDHYRTFALLERLLTVPSKLTEQMIFQLDEQTKHMLIXKYYDLXDA 250
           L+    L  ++T   L+ L+T+ + +T Q +  L + T+H +  + YDL DA
Sbjct: 449 LMTLQTLVTFQTLMTLQTLMTLQTLMTLQTLMTL-QTTRHAMSLRAYDLTDA 499


>SB_18246| Best HMM Match : SRF-TF (HMM E-Value=3.3)
          Length = 598

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +2

Query: 107 DVLDHYRTFALLERLLTVPSK--LTEQMIFQLDEQTKHMLIXKYYDLXDAVIXELLGRKL 280
           D+L+    F    +LLT  S   L  Q+IF    Q + +L    +DL +  +     RKL
Sbjct: 204 DLLEVQVIFTKERKLLTKHSHDLLEVQVIFT---QERKLLTKHSHDLLEVQVIFTKERKL 260

Query: 281 SSRHRKDLXEV 313
            ++H +DL EV
Sbjct: 261 LTKHSRDLLEV 271



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +2

Query: 107 DVLDHYRTFALLERLLTVPSK--LTEQMIFQLDEQTKHMLIXKYYDLXDAVIXELLGRKL 280
           D+L+    F    +LLT  S+  L  Q+IF    Q + +L    +DL +  +     RKL
Sbjct: 246 DLLEVQVIFTKERKLLTKHSRDLLEVQVIFT---QERKLLTKHSHDLLEVQVIFTKERKL 302

Query: 281 SSRHRKDLXEV 313
            ++H  DL EV
Sbjct: 303 LTKHSHDLLEV 313



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +2

Query: 107 DVLDHYRTFALLERLLTVPSK--LTEQMIFQLDEQTKHMLIXKYYDLXDAVIXELLGRKL 280
           D+L+    F    +LLT  S   L  Q+IF    Q + +L    +DL +  +     RKL
Sbjct: 288 DLLEVQVIFTKERKLLTKHSHDLLEVQVIFT---QERKLLTKHSHDLLEVQVIFTKERKL 344

Query: 281 SSRHRKDLXEV 313
            ++H +DL EV
Sbjct: 345 LTKHSRDLLEV 355


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 391  RDARKRGRQYKKHILAVRPAREXV 462
            ++ARK G   KKH++A + AR  V
Sbjct: 2853 KNARKEGENMKKHVMAEKDARSKV 2876


>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +2

Query: 308 EVAERSGAPLRCCRRQFDNVR-XVFKAVEEMPGNVVANIRSTFLLSDPLAXKYGAVVFIA 484
           E A  SG+P+ C R  FD  R  +    E    +V+A I   + LS P       +V +A
Sbjct: 738 EDASLSGSPVACVRSSFDMWRDHMSPGTERKLSHVLAAI---YGLSSPFTVALNLLVLVA 794

Query: 485 CMRFDTAKRK 514
             R  + + K
Sbjct: 795 LYRVSSLRSK 804


>SB_41982| Best HMM Match : Cys_rich_FGFR (HMM E-Value=4.8)
          Length = 99

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 152 AASQAMQKFCNDRVHRWLSAXQMFLNVWLHHADAELTLLH*MSNPR 15
           A S+ + + C D ++RW++A + FLN        EL +LH    P+
Sbjct: 32  ALSRHLVESCIDDINRWMTANKFFLN----GDKMELLVLHARHRPK 73


>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
          Length = 1772

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -2

Query: 168  FDGTVSSLSSNAKVL**SSTSLAISXTDV 82
            FDGTV+S S NAK +  S +  + S TDV
Sbjct: 1610 FDGTVASESDNAKPVGGSRSESSSSSTDV 1638


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,071,328
Number of Sequences: 59808
Number of extensions: 365388
Number of successful extensions: 937
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)