Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C13
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containi...    29   3.5  
At1g10710.1 68414.m01219 hypothetical protein                          28   4.7  

>At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 722

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 499 HGETEAAIFILQRFLSLRPGHNGQL 573
           HGE E   F  +R L L P H+G L
Sbjct: 526 HGELELGKFAAKRILELEPDHDGAL 550


>At1g10710.1 68414.m01219 hypothetical protein
          Length = 294

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 507 NGSCNIYPSTISIIAPRP*WAAGRTVAP 590
           N S  I+PS++  + PRP + AG+ + P
Sbjct: 195 NPSIEIFPSSVPEVLPRPEYEAGQALYP 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,894,543
Number of Sequences: 28952
Number of extensions: 236784
Number of successful extensions: 638
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)