Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C11
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   3.8  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   6.7  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    24   6.7  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 4   VKRLHSTTTKAPPRGWQDGKKDFTSKPTYTKFHVFDENDPY 126
           V R   T  K    G +  K D+TS   + K  +FD+  PY
Sbjct: 103 VSRYSETLDKGLLNGDKTTKGDYTSLRRFRKPFLFDKLSPY 143


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 123 WIIFIKNMELCVCWFRSKIFFAIL 52
           WI+F  +    VC F  K+ F +L
Sbjct: 460 WILFSDSFNQLVCTFLGKLLFQML 483


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 70  FTSKPTYTKFHVFDENDPYGI*FHNIHLVKLVNIM 174
           F+  PT  ++HV   ++   + +H IH   L NI+
Sbjct: 401 FSVPPTLQEYHVSVSSEKPILLYHLIHSKNLTNIL 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 986,345
Number of Sequences: 5004
Number of extensions: 17853
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)