Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C11
         (371 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101307-1|AAK84528.2|  294|Caenorhabditis elegans Serpentine re...    27   5.7  
AF022983-8|AAB69948.3|  294|Caenorhabditis elegans Serpentine re...    27   5.7  
AL110484-14|CAB54405.1|  127|Caenorhabditis elegans Hypothetical...    26   9.9  

>AF101307-1|AAK84528.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein31 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 132 NTIWIIFIKNMELCVCWFR-SKIFFAILPTSRWSF 31
           N +W+  I     C CW+  SK FF    T  W+F
Sbjct: 125 NYLWVFSIA---FCTCWYEISKCFF-FYDTQTWTF 155


>AF022983-8|AAB69948.3|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein32 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 132 NTIWIIFIKNMELCVCWFR-SKIFFAILPTSRWSF 31
           N +W+  I     C CW+  SK FF    T  W+F
Sbjct: 125 NYLWVFSIA---FCTCWYEISKCFF-FYDTQTWTF 155


>AL110484-14|CAB54405.1|  127|Caenorhabditis elegans Hypothetical
           protein Y38E10A.14 protein.
          Length = 127

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
 Frame = -1

Query: 131 IPYGSFSS-----KTWNFVYVGLEVKSFLPSCQPL 42
           +P+ S+ S      T+N   + L+ K  LP C PL
Sbjct: 93  VPFSSYHSFIVTHSTFNITMIALQSKCILPPCLPL 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,414,187
Number of Sequences: 27780
Number of extensions: 99874
Number of successful extensions: 240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)