Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C09
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    26   1.6  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    26   2.2  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   5.0  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   6.7  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    24   6.7  

>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 37  DRSVG-CTHVKSCWLKMTLITEY*LNSTGNRRI*DWWKKCTTTKNC-LDYVQ 186
           DR+V     V   W K   + E   N TG R++ + W K    +NC + Y++
Sbjct: 128 DRAVTQLPRVDKLWYKYVYMEEMLGNITGCRQVFERWLKWEPDENCWMSYIR 179


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 165 FCSCTFLPPILD 130
           +CSC FLP +LD
Sbjct: 379 YCSCNFLPSVLD 390


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 144 PPILDSSITS*VESILCN*SHFQPTRFNMRTPNASI 37
           PP+L  S+   V+ I+C     + T F +R    SI
Sbjct: 165 PPVLKKSLDYLVDKIVCGPDPLENTHFFVRDRTRSI 200


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 259 RKEISLFXLYVVKYNLLILFQF-SFFVH 179
           RK I+L  L+  +YN   LFQ+ S FVH
Sbjct: 487 RKGIALTKLHSQQYNESTLFQYLSEFVH 514


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 83  IFSQQDLTCVHPTLRSRENSGF 18
           +F  QDL CV P   ++E+  F
Sbjct: 369 LFKSQDLVCVTPKQSTKESERF 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,041,461
Number of Sequences: 5004
Number of extensions: 17619
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)