Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C09
         (371 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073...    27   6.2  

>07_03_1343 -
           25905475-25905678,25907025-25907167,25907273-25907366,
           25907526-25907687,25907884-25907952,25908631-25908843,
           25909054-25909113,25909294-25909382,25909745-25910063
          Length = 450

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 140 GGRNVQLQKIVWTMYKE 190
           GG  V + K++WT YKE
Sbjct: 432 GGLEVDVSKLIWTPYKE 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,601,730
Number of Sequences: 37544
Number of extensions: 85809
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)