Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C09
         (371 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16978| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_49197| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  

>SB_16978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 113 ELSQYSVIKVIFSQQDLTCVHPT 45
           ELS++ V++ IF ++DL   HPT
Sbjct: 14  ELSKFRVVRGIFVKRDLAIFHPT 36


>SB_49197| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +1

Query: 112 STGNRRI*DWWKKCTTTKNCLDYV---QRMKIETVLINC 219
           +TG     D++K  T   NC DY    Q ++I T++ NC
Sbjct: 97  ATGITNCDDYYKIATGITNCDDYYKLRQVLQIATIITNC 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,937,981
Number of Sequences: 59808
Number of extensions: 109974
Number of successful extensions: 183
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)