Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C09
         (371 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80029-19|AAB37598.1|  139|Caenorhabditis elegans Hypothetical p...    28   1.9  
AC025715-2|AAK68447.2|  439|Caenorhabditis elegans Hypothetical ...    27   3.2  

>U80029-19|AAB37598.1|  139|Caenorhabditis elegans Hypothetical
           protein T20D4.19 protein.
          Length = 139

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 58  HVKSCWLKMTLITE--Y*LNSTGNRRI*DWWKKCTTTKNCLDYVQ 186
           H  +C+L++    E  Y L+ T    + ++ K CT+  +CL+ +Q
Sbjct: 42  HAINCFLRLADYVEKMYELDMTDKTEVNEFEKSCTSLTSCLETIQ 86


>AC025715-2|AAK68447.2|  439|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.6 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 109 NSTGNRRI*DWWKKCTT 159
           N +G RR+ DW  KCTT
Sbjct: 154 NKSGGRRVSDWIVKCTT 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,578,499
Number of Sequences: 27780
Number of extensions: 95811
Number of successful extensions: 215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)