Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C08
         (340 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   0.65 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   3.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   4.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   4.6  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   4.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   4.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   4.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 305 VDCCCHGSPTP 337
           V+C  HG+PTP
Sbjct: 43  VECSAHGNPTP 53


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 190 H*WLPVLGFQLSGNSGREAQPLL 258
           H W+PV+   +S  + ++  PL+
Sbjct: 476 HTWMPVMRICVSAWNPKDCDPLI 498


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 168 GTGGLLTPLVAPG 206
           G G  LTPL +PG
Sbjct: 379 GMGPSLTPLASPG 391


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 309 STVTQCCRPLNFRSMLVQQRLCF 241
           ST    CR   FR+   +  +CF
Sbjct: 383 STTANSCRSSTFRNNRDEYNVCF 405


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 208 LGFQLSGNSGREAQ 249
           LGF++S NSG  +Q
Sbjct: 27  LGFKISDNSGINSQ 40


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 208 LGFQLSGNSGREAQ 249
           LGF++S NSG  +Q
Sbjct: 47  LGFKISDNSGINSQ 60


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 168 GTGGLLTPLVAPG 206
           G G  LTPL +PG
Sbjct: 379 GMGPSLTPLASPG 391


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,060
Number of Sequences: 336
Number of extensions: 1278
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)