Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C08
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.34 
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    26   1.8  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   1.8  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    25   4.2  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    24   7.3  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   7.3  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    24   7.3  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    23   9.6  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 28.3 bits (60), Expect = 0.34
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 165 ILQHRRPRLPLMQLEAPCSFNFCSLRA 85
           I Q     LP + L +PCSF  CSLRA
Sbjct: 48  IAQKSNISLPFLTL-SPCSFTICSLRA 73


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 210 EHREPLMESTDPQCHILQHRRPRLPLMQLEAPCSF 106
           E+ +  M+S   Q ++L   RP LPL     P  F
Sbjct: 82  ENGDLTMDSLSHQIYLLHKNRPTLPLKPTNQPTRF 116


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +2

Query: 32  SRTLNFLNQHSSFYTCAIARREQKLKEHGASSCISGKRGRRCCNIWHWGS 181
           +R L +  Q + +    I    Q   E  A +C  G  G  C  +W+W +
Sbjct: 372 ARFLGYTMQLAPYTVETILPYIQSSAEAAALACSGGSDGVTCGYMWYWNN 421


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -2

Query: 132 MQLEAPCSFNFCSLRAIAQV*KLLC*LRKFRVRLVQTQESV 10
           +Q+E    F   S   + ++ K+ C   K+R  +  T+E +
Sbjct: 11  LQIENKFVFRSSSWNCVRRIGKIACNENKYRYEMTSTEEDI 51


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 202 PVLGFQ-LSGNSGREAQPLLHKHTTEI 279
           PV G Q LS N+G E+Q    KH+T +
Sbjct: 364 PVTGDQYLSLNNGTESQSKTTKHSTSL 390


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 171 CHILQHRRPRLPLMQLEAPCSFNFCSLRAI 82
           CH L HR+  L  M+  + C    C L A+
Sbjct: 647 CHHLYHRQCLLQWMETRSICPVCRCHLPAV 676


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 201 EPLMESTDPQCHILQHRRPRLPLMQL-EAPCSF 106
           +P   +TD Q ++ +H  PRLP   + + P SF
Sbjct: 506 DPDPSNTDTQWNVEEHINPRLPEGSINDYPSSF 538


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -2

Query: 330 GLPWQQQSTVTQCCRPLNFRSMLVQQRLCFPAAIPAELK 214
           GL  QQ +  T     LNF   L   R+    A  AELK
Sbjct: 504 GLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELK 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,197,292
Number of Sequences: 5004
Number of extensions: 19240
Number of successful extensions: 32
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)