Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C08
         (340 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0269 + 16265191-16265472,16265574-16266149                       27   3.8  
02_01_0189 - 1273313-1274157,1274595-1275549                           27   5.0  
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545...    26   6.6  
08_01_0060 - 413088-413999                                             26   6.6  
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494...    26   6.6  
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825...    26   8.7  
07_03_1572 - 27815760-27815819,27816374-27816494,27816580-278166...    26   8.7  

>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 192 MESTDPQCHILQHRRPRLPL 133
           M  T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176


>02_01_0189 - 1273313-1274157,1274595-1275549
          Length = 599

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 237 QGSTAAAAQAYYGNLVAGSIVSQLTAAAMVAP 332
           QGS   A +A +G LVA  +V +L AA    P
Sbjct: 2   QGSVVTARRAVHGILVAVVVVQRLLAAGASPP 33


>11_01_0669 -
           5454116-5454153,5454569-5454770,5454865-5455029,
           5455278-5456183
          Length = 436

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 41  LNFLNQHSSFYTCAIARREQKLKEHGASSCISGKRG 148
           L+ L  H +  TC +ARR + L EH  +  ++   G
Sbjct: 34  LSLLPAHDAVRTCVLARRWRHLWEHAPALRVTDVEG 69


>08_01_0060 - 413088-413999
          Length = 303

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 228 PAELKPEHREPLMESTDPQCHILQHRRPRL 139
           PA +K   R  +  S DPQ    +HRR R+
Sbjct: 147 PATIKKPRRRNVRISDDPQSVAARHRRERI 176


>03_05_0780 +
           27646936-27647084,27647168-27647289,27649380-27649458,
           27650346-27650427,27650483-27650600,27650695-27651050,
           27651404-27652222,27652846-27653265,27653426-27653437
          Length = 718

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 180 DPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIAQV 73
           +PQCH  Q RRP   L    + C  +   + A+A V
Sbjct: 509 EPQCHSRQCRRPATVLSPPTSRCCHHRYEICAVATV 544


>08_02_0516 +
           18080706-18080760,18081796-18081885,18082479-18082573,
           18083658-18083726,18083812-18084393
          Length = 296

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 237 AAIPAELKPEHREPLMESTDPQCHILQHRRPRLPLMQL 124
           AA P E +PE ++   +   PQ H  Q ++P  P +QL
Sbjct: 140 AAKPKEPEPEAQQQTQQPPQPQLH-PQPQQPLQPQLQL 176


>07_03_1572 -
           27815760-27815819,27816374-27816494,27816580-27816620,
           27816737-27816797,27817549-27817635,27817728-27817855,
           27817935-27818050,27820671-27820789,27820892-27820983,
           27821082-27821169,27822523-27822902
          Length = 430

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 186 TPLVAPGARVSAQRE*RQGSTAAAAQAYYGNLVAGSIVSQLTAAAMVA 329
           T   A  A   AQ   R  +  AAA+A    LV  +   ++ AAAMVA
Sbjct: 10  TAAAAAAAPADAQPRARPAAAVAAAEAADAELVLRAPNLRVVAAAMVA 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,685,972
Number of Sequences: 37544
Number of extensions: 157691
Number of successful extensions: 418
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)