Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_C08
(340 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 23 1.0
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 21 3.1
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 4.1
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 21 5.4
U15955-1|AAA67443.1| 95|Apis mellifera defensin precursor prot... 20 7.1
AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor prot... 20 7.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 20 9.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 20 9.4
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 23.0 bits (47), Expect = 1.0
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 35 RTLNFLNQHSSFY 73
RTLN LN H S Y
Sbjct: 412 RTLNSLNNHKSIY 424
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 21.4 bits (43), Expect = 3.1
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +2
Query: 71 YTCAIARRE---QKLKEHGASSCISGKRG 148
Y CA+ R+E QK K+ S+ ++G G
Sbjct: 261 YQCAVKRKEEKAQKEKDKPNSTTMNGSPG 289
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.0 bits (42), Expect = 4.1
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -3
Query: 149 DRVYH*CS*KPHVPLIFVLFER*RRYKSYY 60
+ +Y+ C +P++ + FV+ R RR Y+
Sbjct: 207 NEIYYNCCPEPYIDITFVVIIR-RRTLYYF 235
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 20.6 bits (41), Expect = 5.4
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -2
Query: 255 QRLCFPAAIPAELKPEHREPLMESTDPQCH 166
+ + + A+P + E + L+++TDP H
Sbjct: 100 EAVSYNVAVPTKSILEKKPELVDATDPGEH 129
>U15955-1|AAA67443.1| 95|Apis mellifera defensin precursor
protein.
Length = 95
Score = 20.2 bits (40), Expect = 7.1
Identities = 8/24 (33%), Positives = 9/24 (37%)
Frame = +2
Query: 248 SRCCTSILRKFSGRQHCVTVDCCC 319
S C + L HC V C C
Sbjct: 58 SACAANCLSLGKAGGHCEKVGCIC 81
>AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor
protein.
Length = 72
Score = 20.2 bits (40), Expect = 7.1
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +2
Query: 71 YTCAIARREQKLKE 112
Y CA+ R+E+K ++
Sbjct: 58 YQCAVKRKEKKAQK 71
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.4
Identities = 5/15 (33%), Positives = 10/15 (66%)
Frame = -2
Query: 333 VGLPWQQQSTVTQCC 289
+G+P ++ + QCC
Sbjct: 163 IGMPGKKNTITYQCC 177
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.4
Identities = 5/15 (33%), Positives = 10/15 (66%)
Frame = -2
Query: 333 VGLPWQQQSTVTQCC 289
+G+P ++ + QCC
Sbjct: 163 IGMPGKKNTITYQCC 177
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.4
Identities = 5/15 (33%), Positives = 10/15 (66%)
Frame = -2
Query: 333 VGLPWQQQSTVTQCC 289
+G+P ++ + QCC
Sbjct: 163 IGMPGKKNTITYQCC 177
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.4
Identities = 5/15 (33%), Positives = 10/15 (66%)
Frame = -2
Query: 333 VGLPWQQQSTVTQCC 289
+G+P ++ + QCC
Sbjct: 163 IGMPGKKNTITYQCC 177
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.4
Identities = 5/15 (33%), Positives = 10/15 (66%)
Frame = -2
Query: 333 VGLPWQQQSTVTQCC 289
+G+P ++ + QCC
Sbjct: 163 IGMPGKKNTITYQCC 177
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.4
Identities = 5/15 (33%), Positives = 10/15 (66%)
Frame = -2
Query: 333 VGLPWQQQSTVTQCC 289
+G+P ++ + QCC
Sbjct: 163 IGMPGKKNTITYQCC 177
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 9.4
Identities = 5/15 (33%), Positives = 10/15 (66%)
Frame = -2
Query: 333 VGLPWQQQSTVTQCC 289
+G+P ++ + QCC
Sbjct: 231 IGMPGKKNTITYQCC 245
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 9.4
Identities = 5/15 (33%), Positives = 10/15 (66%)
Frame = -2
Query: 333 VGLPWQQQSTVTQCC 289
+G+P ++ + QCC
Sbjct: 231 IGMPGKKNTITYQCC 245
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,671
Number of Sequences: 438
Number of extensions: 1671
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 7715466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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