Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C08
         (340 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27370.1 68417.m03929 myosin family protein contains Pfam pro...    31   0.20 
At2g43850.2 68415.m05452 ankyrin protein kinase, putative (APK1)...    29   1.0  
At2g43850.1 68415.m05451 ankyrin protein kinase, putative (APK1)...    29   1.0  
At3g50330.1 68416.m05504 basic helix-loop-helix (bHLH) family pr...    28   1.4  
At5g67060.1 68418.m08455 basic helix-loop-helix (bHLH) family pr...    27   2.4  
At2g39780.1 68415.m04884 ribonuclease 2 (RNS2) identical to ribo...    27   4.2  
At1g26670.1 68414.m03249 vesical transport v-SNARE 12 (VTI12) / ...    27   4.2  
At2g31800.1 68415.m03882 ankyrin protein kinase, putative simila...    26   7.4  
At5g09750.1 68418.m01129 basic helix-loop-helix (bHLH) family pr...    25   9.7  

>At4g27370.1 68417.m03929 myosin family protein contains Pfam
           profiles: PF00063 myosin head (motor domain), PF00612 IQ
           calmodulin-binding motif
          Length = 1126

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 41  LNFLNQHSSFYTCAIARREQKLKEH-GASSCISGKRGR 151
           ++ LN+ S+F          KLK+H  A+SC  G+RGR
Sbjct: 590 VSLLNEESNFPKATDTTFANKLKQHLNANSCFKGERGR 627


>At2g43850.2 68415.m05452 ankyrin protein kinase, putative (APK1)
           similar to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674;contains Pfam profile PF00069:
           Protein kinase domain; contains Pfam profile PF00023:
           Ankyrin repeat
          Length = 479

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +3

Query: 177 GLLTPLVAPGARVSAQRE*RQGSTAAAAQAYYGNL 281
           G++  L++  A + A+   R GSTAAA   YYGNL
Sbjct: 125 GVVKALLSRRANIDARD--RWGSTAAADAKYYGNL 157


>At2g43850.1 68415.m05451 ankyrin protein kinase, putative (APK1)
           similar to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674;contains Pfam profile PF00069:
           Protein kinase domain; contains Pfam profile PF00023:
           Ankyrin repeat
          Length = 479

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +3

Query: 177 GLLTPLVAPGARVSAQRE*RQGSTAAAAQAYYGNL 281
           G++  L++  A + A+   R GSTAAA   YYGNL
Sbjct: 125 GVVKALLSRRANIDARD--RWGSTAAADAKYYGNL 157


>At3g50330.1 68416.m05504 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 231

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 273 RSMLVQQRLCFPAAI-PAELKPEHREPLMESTDPQCHILQHRRPRL 139
           R M+ +  +  P  I P  +KP  R+ +  S DPQ    +HRR R+
Sbjct: 96  REMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQSVAARHRRERI 141


>At5g67060.1 68418.m08455 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 241

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 273 RSMLVQQRLCFPAAI-PAELKPEHREPLMESTDPQCHILQHRRPRL 139
           R M+ +  +  P  I P  +KP  R  +  S DPQ    +HRR R+
Sbjct: 99  REMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERI 144


>At2g39780.1 68415.m04884 ribonuclease 2 (RNS2) identical to
           ribonuclease 2 precursor SP:P42814, GI:289210; contains
           a ribonuclease T2 family histidine active site signature
           (PDOC00459)
          Length = 259

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 284 GRQHCVTVDCCCHGSPTP 337
           G +HC + + CC GS  P
Sbjct: 48  GTRHCCSKNACCRGSDAP 65


>At1g26670.1 68414.m03249 vesical transport v-SNARE 12 (VTI12) /
           vesicle soluble NSF attachment protein receptor VTI1b
           (VTI1B) receptor VTI1b identical to SP|Q9SEL5 Vesicle
           transport v-SNARE 12 (AtVTI12) (Vesicle transport
           v-SNARE protein VTI1b) (Vesicle soluble NSF attachment
           protein receptor VTI1b) (AtVTI1b) {Arabidopsis thaliana}
          Length = 222

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -2

Query: 315 QQSTVTQCCRPLN-FRSMLVQQRLCFPAAIPAELKPEHREPLMESTDPQCH-ILQHRRPR 142
           Q S    C   L  ++S L Q +  F     A+ KP  RE LMES     H +   +R R
Sbjct: 64  QPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQRGR 123

Query: 141 LPL 133
           L +
Sbjct: 124 LAM 126


>At2g31800.1 68415.m03882 ankyrin protein kinase, putative similar
           to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674; contains Pfam profile PF00023:
           Ankyrin repeat; identical to cDNA calcineurin B-like
           protein 10 (CBL10) GI:29150247; blastp match of 67%
           identity and 1.9e-200 P-value to
           GP|18700701|gb|AAL78674.1|AF458699_1|AF458699
           ankyrin-kinase {Medicago truncatula}
          Length = 476

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 234 RQGSTAAAAQAYYGNL 281
           R GSTAAA   YYGN+
Sbjct: 139 RWGSTAAADAKYYGNM 154


>At5g09750.1 68418.m01129 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 224

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 228 PAELKPEHREPLMESTDPQCHILQHRRPRL 139
           PA +K   R  +  S DPQ    +HRR R+
Sbjct: 112 PATVKKPKRRNVRISDDPQSVAARHRRERI 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,472,265
Number of Sequences: 28952
Number of extensions: 107708
Number of successful extensions: 241
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)