Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C05
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    57   3e-09
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    28   1.4  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   3.1  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    26   4.1  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   7.2  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   9.5  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   9.5  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.5  

>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 54/172 (31%), Positives = 73/172 (42%), Gaps = 12/172 (6%)
 Frame = +3

Query: 174 LKAEWISVDPYLRA------YNSYQAVPYDQ----FSYQVGVVVQSRDSNYPVGTRVVAH 323
           LK  + SVDPYLR       + SY   P +     ++  V  VV+S    Y  G  VV  
Sbjct: 48  LKNIYTSVDPYLRMRMQSPKHASY-IPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFV 106

Query: 324 KGWCDHYVFTPSTQPN--TPKDRIYKLPDLQGLSPSLGVGAVGMPGATAYFGFLEICKPK 497
            GW + Y F          P +  YKLP +        VG++GMP  TAY G   I KPK
Sbjct: 107 SGW-EEYTFVSKQALGFLQPINNPYKLPLIDF------VGSLGMPSQTAYCGLKHIGKPK 159

Query: 498 XXXXXXXXXXXXXXXSLVGQIAXIKGCRVIXFAGTDDKVKWLEEELGFDKAF 653
                           + GQ+A   G  V+   G+D+K K +  + G+D  F
Sbjct: 160 AGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFK-ICLDSGYDSVF 210


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +3

Query: 207 LRAYNSYQAVPYD---QFSYQVGVVVQSRDSNYPVGTRVVAHKGWCDHYVFTPSTQPNTP 377
           L AY +YQ V Y+   + SY+  ++    +     G  V+  + W    +  P++     
Sbjct: 133 LNAYFAYQVVGYNGTGRVSYREALLAVFVEGFIFTGLTVIGLRQWLARVI--PASLKFAT 190

Query: 378 KDRIYKLPDLQGLSPSLGVGAVG 446
              I     + GLSPS G+G +G
Sbjct: 191 GAGIGLYLTIIGLSPSAGLGVIG 213


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 591 FAGTDDKVKWLEEEL 635
           F+ +DD+V WLEE+L
Sbjct: 542 FSNSDDRVAWLEEQL 556


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 351 TPSTQPNTPKDRIYKL-PDLQGLSPSLGVGAVG 446
           TP  QP  PK R ++L PDL  ++   G  ++G
Sbjct: 148 TPKPQPGNPKPRYFRLKPDLSVIN-RYGFNSIG 179


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 327 LCAQQLSFLPDSCYPLIGQQH 265
           LC  + SF  D   PL+G QH
Sbjct: 240 LCGSENSFNDDGFNPLVGSQH 260


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 126 NXSNLLYRL*STARSSLKAEWISVDP---YLRAYNSYQAVP 239
           N S+   R+ +T  ++LK +W S+ P   Y  +YN    +P
Sbjct: 308 NVSSTGERVLTTDYNNLKKQWASISPNITYKHSYNPNGTIP 348


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 316 LRTKDGATTTSSLLVRNLTLQRIVFINYQICRDCRRRWA 432
           LR+   A  T   ++RN +       ++ +CRDC  + A
Sbjct: 55  LRSSSVACNTCLKIIRNDSFHCTKCFDFDVCRDCYAKQA 93


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 106 YTFKVVLHDVLXS*GHLDFCGSLSF 32
           YT+ ++ H+VL S  +  F GSL F
Sbjct: 712 YTYPLIEHEVLDSKNYFVFKGSLLF 736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,649
Number of Sequences: 5004
Number of extensions: 48897
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)