Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C05
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   37   0.012
SB_32117| Best HMM Match : DUF1143 (HMM E-Value=7.7)                   31   0.82 
SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)       29   2.5  
SB_10651| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)       29   2.5  
SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 12/171 (7%)
 Frame = +3

Query: 174 LKAEWISVDPYLRA-YNSYQAVPY-DQFSY-------QVGVVVQSRDSNYPVGTRVVAHK 326
           +K  ++SVDPY+R+  N   +V Y   F          VG V +S+   + VG  V    
Sbjct: 44  VKTLYLSVDPYMRSRMNEGGSVGYIAPFEIGKVLSGGGVGRVEESKSDKFSVGDIVECFG 103

Query: 327 GWCDHYVFTPSTQPNTPKDRIYKLPDLQGLSPSLGVGAVGMPGATAYFGFLE--ICKPKX 500
               HY   P    +  K       ++   +PSL +G  G+   T+     E     P  
Sbjct: 104 FPWQHYCVLPEDHQSLRKVE----SEIVCENPSLALGLCGLTALTSLIALQERGHIVPGQ 159

Query: 501 XXXXXXXXXXXXXXSLVGQIAXIKGC-RVIXFAGTDDKVKWLEEELGFDKA 650
                         S  GQIA I GC +++   G+++K +++ +ELGFD +
Sbjct: 160 NQTVVVTGAAGACGSAAGQIAKIFGCGKLVGICGSEEKCQYI-KELGFDSS 209


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 21/90 (23%), Positives = 40/90 (44%)
 Frame = +3

Query: 375 PKDRIYKLPDLQGLSPSLGVGAVGMPGATAYFGFLEICKPKXXXXXXXXXXXXXXXSLVG 554
           PK++++ LP     + + G+  V +   TA++ F E+   +               S++ 
Sbjct: 114 PKNQLFALPKKMSKNEAAGLPTVAL---TAWYAFFELAHTRPGAWVLVHSAAGGVGSMLV 170

Query: 555 QIAXIKGCRVIXFAGTDDKVKWLEEELGFD 644
           Q+A I GC  +   G   K+ ++   LG D
Sbjct: 171 QMAKIAGCHAVGVVGAGHKIDFV-RSLGCD 199


>SB_32117| Best HMM Match : DUF1143 (HMM E-Value=7.7)
          Length = 755

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   LSGSACDKKTQGPTKVEMTSAXKYVVKNHFKGVP 109
           L G   D   +G  K    S+  + +KN+FKG+P
Sbjct: 693 LEGKEADSDDEGSLKDNRRSSRSFSIKNYFKGIP 726


>SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)
          Length = 187

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 342 SGRTIL--CAQQLSFLPDSCYPLIGQQHRLDN*TGRRV 235
           SG++ L  C    SF+P  CYP IG    +D  TG+ +
Sbjct: 134 SGQSYLPKCQSDGSFVPMQCYPAIGYCWCVDEQTGKHI 171


>SB_10651| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)
          Length = 74

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 342 SGRTIL--CAQQLSFLPDSCYPLIGQQHRLDN*TGRRV 235
           SG++ L  C    SF+P  CYP IG    +D  TG+ +
Sbjct: 21  SGQSYLPKCQSDGSFVPMQCYPAIGYCWCVDEQTGKHI 58


>SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 342 SGRTIL--CAQQLSFLPDSCYPLIGQQHRLDN*TGRRV 235
           SG++ L  C    SF+P  CYP IG    +D  TG+ +
Sbjct: 271 SGQSYLPKCQSDGSFVPMQCYPAIGYCWCVDEQTGKHI 308


>SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 957

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 493 GLQISKKPK*AVAPGIPTAPTPSDGDNPCRSGSL*IRSFGVLGCVLGVKT 344
           GL+         + G+P+A TP+ G N   S S  I   G+L   +G+ T
Sbjct: 845 GLRADDAASGTASAGMPSAHTPAPGSNSAWSASSVIELAGLLVSSIGLYT 894


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,581,215
Number of Sequences: 59808
Number of extensions: 413978
Number of successful extensions: 913
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)