Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C05
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46935-8|CAL36511.1|  365|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z46935-7|CAL36510.1|  373|Caenorhabditis elegans Hypothetical pr...    46   2e-05
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    29   3.8  
Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical p...    27   8.8  

>Z46935-8|CAL36511.1|  365|Caenorhabditis elegans Hypothetical
           protein M106.3b protein.
          Length = 365

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +3

Query: 396 LPDLQGLSPSLGVGAVGMPGATAYFGFLE--ICKPKXXXXXXXXXXXXXXXSLVGQIAXI 569
           LP  +  SPS+ +   G+ G TA  G  +  +                   SL GQIA I
Sbjct: 138 LPSSRNFSPSVILSCAGLSGITALLGIRKKALIDRSRPQTIVVSGAAGSCGSLAGQIARI 197

Query: 570 KGC-RVIXFAGTDDKVKWLEEELGFD 644
           +GC +VI   G+DDK   L+ E GF+
Sbjct: 198 EGCSKVIGICGSDDKCTVLKREFGFN 223


>Z46935-7|CAL36510.1|  373|Caenorhabditis elegans Hypothetical
           protein M106.3a protein.
          Length = 373

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +3

Query: 396 LPDLQGLSPSLGVGAVGMPGATAYFGFLE--ICKPKXXXXXXXXXXXXXXXSLVGQIAXI 569
           LP  +  SPS+ +   G+ G TA  G  +  +                   SL GQIA I
Sbjct: 146 LPSSRNFSPSVILSCAGLSGITALLGIRKKALIDRSRPQTIVVSGAAGSCGSLAGQIARI 205

Query: 570 KGC-RVIXFAGTDDKVKWLEEELGFD 644
           +GC +VI   G+DDK   L+ E GF+
Sbjct: 206 EGCSKVIGICGSDDKCTVLKREFGFN 231


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
            autosome protein2 protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +2

Query: 152  LIDGEVLA*SRMDQRRPVFKGLQLLPSCTLRPVQLSSRCCCP 277
            LI  E LA  RMD +R   +GL  + S  L P+QL  R   P
Sbjct: 944  LITSEPLA-ERMDAKRRSSEGLVAVTSTPLPPIQLPQRSQAP 984


>Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical
           protein F39B2.3 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 4/148 (2%)
 Frame = +3

Query: 195 VDPYLRA--YNSYQAVPYDQFSYQVGVVVQSRDS--NYPVGTRVVAHKGWCDHYVFTPST 362
           VD Y+RA  Y     +PY       G V    +S  N  VG RV     W        ST
Sbjct: 51  VDTYIRAGQYGKLPNLPYVPGKDGAGFVELVGESVKNVKVGDRV-----WYGSEA--DST 103

Query: 363 QPNTPKDRIYKLPDLQGLSPSLGVGAVGMPGATAYFGFLEICKPKXXXXXXXXXXXXXXX 542
                 +R ++LP+  G+S   G  ++G+P  TAY     +   K               
Sbjct: 104 AEYVAVNRPFELPE--GVSFEEGA-SLGVPYLTAYRALFHLAGAKTGDVILVHGASGGVG 160

Query: 543 SLVGQIAXIKGCRVIXFAGTDDKVKWLE 626
           S + Q+A  +    +  AG+ D +++++
Sbjct: 161 SALMQLAAWRNIEAVGTAGSADGIRFVK 188


>Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical
           protein F53F4.8 protein.
          Length = 856

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 483 FLRNQNRQSRPASQPPLRP--ATATIPADLVVYKYDP 379
           F RN N    PA  P + P  A AT  A+L  Y+Y P
Sbjct: 574 FFRNHNTLGEPAQDPAVWPSVAAATKIANLFRYQYLP 610


>U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical
           protein R05F9.12 protein.
          Length = 955

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 483 FLRNQNRQSRPASQPPLRP--ATATIPADLVVYKYDP 379
           F RN N    PA  P + P  A AT  A+L  Y+Y P
Sbjct: 641 FFRNHNTIGAPAQDPAVWPSVAAATKKANLFRYQYLP 677


>Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical
           protein F36G9.6 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 77  YVVKNHFKGVPKQEDYELXEFVIPPLI 157
           Y + + F GVPK  DY+   F +P L+
Sbjct: 4   YSIPSGFHGVPKFIDYQFSFFTVPVLL 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,984,223
Number of Sequences: 27780
Number of extensions: 281598
Number of successful extensions: 744
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)