Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C02
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.47 
SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_5266| Best HMM Match : VWA (HMM E-Value=0)                          28   5.8  
SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023)                 28   5.8  

>SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +2

Query: 95  IQRTYIIYLDTTITMASPLQQFVNNVRTMSASGNFRDLYEII---AKSDEVLQRNSFHLN 265
           +Q+ Y  Y+   +  ++ + Q    VR     G+FRDL ++     K D +   N +   
Sbjct: 372 VQQLYSRYISLVLQKSAQISQDAEKVRIKFVLGDFRDLPQVSQEGVKFDRIHMSNLWDYG 431

Query: 266 TVLETLDIQQHSL 304
            + E L + +H L
Sbjct: 432 DLSEVLSLAKHFL 444


>SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 387 NC*YIVDLSTSGLPG-GKENLATRTAKTPNECCWISRVSSTVLRWKL 250
           NC  ++D+ST  +PG  K+N A  T  T   C  I  ++   + +KL
Sbjct: 725 NCRNVIDVSTPSIPGHSKKNKAAET--TNQTCVAIKFINKEFITFKL 769


>SB_5266| Best HMM Match : VWA (HMM E-Value=0)
          Length = 797

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 225 NQMKCCRGIASTSIQYLKLLISNSIHWVF*QSWWPNFPC 341
           N++ C +  +S  +  ++LL  +S+ W    SW P+F C
Sbjct: 538 NKLGCYKEESSLRMLPVRLLDKSSVAWDSFSSWLPDFVC 576


>SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023)
          Length = 1169

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/55 (30%), Positives = 33/55 (60%)
 Frame = +2

Query: 479 VXIKQPIRGLQILKKAITKIQLFDSQLTSIHADLCQLCLLSKCMKPALEFLDTDV 643
           V  K  +RGL  +++++ +  LF+S ++SI+A + +L      +K +LEF   D+
Sbjct: 29  VVTKAAVRGLLKVQESMLR-SLFESTVSSINARVDELVGTIAGIKASLEFSQKDI 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,299,649
Number of Sequences: 59808
Number of extensions: 382601
Number of successful extensions: 740
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)