Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C02
         (653 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001891-1|AAH01891.1|  423|Homo sapiens COP9 constitutive photo...   204   3e-52
AF098109-1|AAD41247.1|  423|Homo sapiens COP9 complex subunit 3 ...   204   3e-52
AF031647-1|AAC14197.1|  403|Homo sapiens JAB1-containing signalo...   178   1e-44

>BC001891-1|AAH01891.1|  423|Homo sapiens COP9 constitutive
           photomorphogenic homolog subunit 3 (Arabidopsis)
           protein.
          Length = 423

 Score =  204 bits (497), Expect = 3e-52
 Identities = 101/172 (58%), Positives = 126/172 (73%)
 Frame = +2

Query: 137 MASPLQQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLA 316
           MAS L+QFVN+VR +SA G    L E+I KS E+L +N  HL+TVL  LD+Q+HSLGVLA
Sbjct: 1   MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA 60

Query: 317 VLVAKFSLPPGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVXIKQP 496
           VL  KFS+P      D  T++ Q   FI+ CNGE +R+ATD +A LCH LTN LV  KQP
Sbjct: 61  VLFVKFSMPS---VPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQP 117

Query: 497 IRGLQILKKAITKIQLFDSQLTSIHADLCQLCLLSKCMKPALEFLDTDVTGI 652
           +RG+ ILK+AI K+Q+  +QLTSIHADLCQLCLL+KC KPAL +LD D+  I
Sbjct: 118 LRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDI 169


>AF098109-1|AAD41247.1|  423|Homo sapiens COP9 complex subunit 3
           protein.
          Length = 423

 Score =  204 bits (497), Expect = 3e-52
 Identities = 101/172 (58%), Positives = 126/172 (73%)
 Frame = +2

Query: 137 MASPLQQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLA 316
           MAS L+QFVN+VR +SA G    L E+I KS E+L +N  HL+TVL  LD+Q+HSLGVLA
Sbjct: 1   MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA 60

Query: 317 VLVAKFSLPPGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVXIKQP 496
           VL  KFS+P      D  T++ Q   FI+ CNGE +R+ATD +A LCH LTN LV  KQP
Sbjct: 61  VLFVKFSMPS---VPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQP 117

Query: 497 IRGLQILKKAITKIQLFDSQLTSIHADLCQLCLLSKCMKPALEFLDTDVTGI 652
           +RG+ ILK+AI K+Q+  +QLTSIHADLCQLCLL+KC KPAL +LD D+  I
Sbjct: 118 LRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDI 169


>AF031647-1|AAC14197.1|  403|Homo sapiens JAB1-containing
           signalosome subunit 3 protein.
          Length = 403

 Score =  178 bits (434), Expect = 1e-44
 Identities = 88/149 (59%), Positives = 110/149 (73%)
 Frame = +2

Query: 206 LYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLAVLVAKFSLPPGNPEVDRSTMYQQ 385
           L E+I KS E+L +N  HL+TVL  LD+Q+HSLGVLAVL  KFS+P      D  T++ Q
Sbjct: 4   LCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLFVKFSMPS---VPDFETLFSQ 60

Query: 386 FHDFINNCNGEQVRFATDLYADLCHLLTNHLVXIKQPIRGLQILKKAITKIQLFDSQLTS 565
              FI+ CNGE +R+ATD +A LCH LTN LV  KQP+RG+ ILK+AI K+Q+  +QLTS
Sbjct: 61  VQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTS 120

Query: 566 IHADLCQLCLLSKCMKPALEFLDTDVTGI 652
           IHADLCQLCLL+KC KPAL +LD D+  I
Sbjct: 121 IHADLCQLCLLAKCFKPALPYLDVDMMDI 149


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,212,848
Number of Sequences: 237096
Number of extensions: 1918432
Number of successful extensions: 6720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6717
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)