Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_C02
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14250.1 68418.m01665 COP9 signalosome complex subunit 3 / CS...    80   1e-15
At2g24610.1 68415.m02940 cyclic nucleotide-regulated ion channel...    27   8.2  

>At5g14250.1 68418.m01665 COP9 signalosome complex subunit 3 / CSN
           complex subunit 3 (CSN3) / FUSCA protein (FUS11) CSN3,
           FUS11; identical to COP9 signalosome subunit 3
           GI:14388969 [Arabidopsis thaliana]; identical to cDNA
           CSN complex subunit 3 (CSN3)  GI:18056656; contains Pfam
           profile PF01399: PCI domain
          Length = 429

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 1/175 (0%)
 Frame = +2

Query: 131 ITMASPLQQFVNNVRTMSASG-NFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLG 307
           I   + ++  + +++ +S S  +   L++++  + + L+       + L+ LD  +HSLG
Sbjct: 2   IGAVNSVEAVITSIQGLSGSPEDLSALHDLLRGAQDSLRAEPGVNFSTLDQLDASKHSLG 61

Query: 308 VLAVLVAKFSLPPGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVXI 487
            L  L      P    +            FIN+C+  Q+R A+  +  LC +L +H++ +
Sbjct: 62  YLYFLEVLTCGPVSKEKAAYEIPI--IARFINSCDAGQIRLASYKFVSLCKILKDHVIAL 119

Query: 488 KQPIRGLQILKKAITKIQLFDSQLTSIHADLCQLCLLSKCMKPALEFLDTDVTGI 652
             P+RG+  L  A+ K+Q+   +LT++H D+ QLCL +K  K     L  D+  I
Sbjct: 120 GDPLRGVGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAKSYKSGFSILSDDIVEI 174


>At2g24610.1 68415.m02940 cyclic nucleotide-regulated ion channel,
           putative (CNGC14) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (GI:4581205)
           [Arabidopsis thaliana]
          Length = 726

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 651 IPVTSVSKNSRAGFIHFESKQSWQRSA*IEVSCE-SNNCIFVIAFF 517
           +P+  V+     G +H + + +WQ +  +  +C+ SNN  F    F
Sbjct: 288 VPLQCVTDFFDCGTLHRDDRNNWQNTTVVFSNCDPSNNIQFTFGIF 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,551,969
Number of Sequences: 28952
Number of extensions: 268005
Number of successful extensions: 610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)