Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_C01
(402 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9GP16 Cluster: 60S ribosomal protein L31; n=27; Coelom... 245 3e-64
UniRef50_P62899 Cluster: 60S ribosomal protein L31; n=48; Metazo... 196 1e-49
UniRef50_Q9GN74 Cluster: 60S ribosomal protein L31; n=20; Coelom... 187 6e-47
UniRef50_Q9V597 Cluster: 60S ribosomal protein L31; n=173; Eukar... 186 1e-46
UniRef50_P51420 Cluster: 60S ribosomal protein L31-3; n=12; Euka... 142 2e-33
UniRef50_Q4PI65 Cluster: Putative uncharacterized protein; n=1; ... 139 2e-32
UniRef50_UPI00005A08CD Cluster: PREDICTED: similar to ribosomal ... 130 8e-30
UniRef50_UPI00005A10F5 Cluster: PREDICTED: similar to ribosomal ... 129 2e-29
UniRef50_Q6Y207 Cluster: Ribosomal protein L31; n=9; Euteleostom... 123 1e-27
UniRef50_Q22DH9 Cluster: 60S ribosomal protein L31, putative; n=... 122 4e-27
UniRef50_Q7RSL1 Cluster: Ribosomal protein L31e, putative; n=7; ... 117 8e-26
UniRef50_UPI000049A444 Cluster: 60S ribosomal protein L31; n=2; ... 112 3e-24
UniRef50_UPI0000D9FB71 Cluster: PREDICTED: similar to ribosomal ... 106 2e-22
UniRef50_Q1X7K2 Cluster: Ribosomal protein L31; n=7; Trypanosoma... 95 5e-19
UniRef50_UPI0000DA1BEE Cluster: PREDICTED: similar to ribosomal ... 87 2e-16
UniRef50_UPI00005A550D Cluster: PREDICTED: similar to ribosomal ... 86 2e-16
UniRef50_UPI0001505641 Cluster: 60S ribosomal protein L31 (RPL31... 85 4e-16
UniRef50_A0CQV2 Cluster: Chromosome undetermined scaffold_24, wh... 72 4e-12
UniRef50_Q7QSE2 Cluster: GLP_426_16236_15916; n=1; Giardia lambl... 72 5e-12
UniRef50_A2EKX9 Cluster: Ribosomal protein L31e, putative; n=6; ... 70 2e-11
UniRef50_Q06740 Cluster: Putative uncharacterized protein; n=1; ... 62 4e-09
UniRef50_P54009 Cluster: 50S ribosomal protein L31e; n=7; Euryar... 58 9e-08
UniRef50_Q98RR6 Cluster: 60S ribosomal protein L31; n=1; Guillar... 56 3e-07
UniRef50_UPI00015BAD97 Cluster: LSU ribosomal protein L31E; n=1;... 54 1e-06
UniRef50_Q8PYQ4 Cluster: 50S ribosomal protein L31e; n=11; Eurya... 50 1e-05
UniRef50_A0RW54 Cluster: Ribosomal protein L31E; n=2; Thermoprot... 49 4e-05
UniRef50_Q8SSC8 Cluster: 60S ribosomal protein L31; n=1; Encepha... 48 5e-05
UniRef50_Q74MC9 Cluster: NEQ364; n=1; Nanoarchaeum equitans|Rep:... 48 9e-05
UniRef50_Q8U3S7 Cluster: 50S ribosomal protein L31e; n=5; Thermo... 48 9e-05
UniRef50_O28213 Cluster: 50S ribosomal protein L31e; n=1; Archae... 47 2e-04
UniRef50_Q9YD25 Cluster: 50S ribosomal protein L31e; n=1; Aeropy... 47 2e-04
UniRef50_Q00ZX3 Cluster: 60S ribosomal protein L31a; n=1; Ostreo... 46 4e-04
UniRef50_Q8ZTU2 Cluster: 50S ribosomal protein L31e; n=4; Pyroba... 44 0.001
UniRef50_Q0W5H1 Cluster: 50S ribosomal protein L31E; n=2; Euryar... 41 0.011
UniRef50_A2X8Z3 Cluster: Putative uncharacterized protein; n=1; ... 40 0.014
UniRef50_P18138 Cluster: 50S ribosomal protein L31e; n=6; Haloba... 40 0.018
UniRef50_A3H875 Cluster: Ribosomal protein L31e; n=1; Caldivirga... 37 0.13
UniRef50_A3DNH4 Cluster: 50S ribosomal protein L31e; n=2; Desulf... 37 0.17
UniRef50_Q6L2L1 Cluster: 50S ribosomal protein L31e; n=2; Thermo... 33 1.6
UniRef50_Q820F4 Cluster: Holliday junction ATP-dependent DNA hel... 33 2.1
UniRef50_Q02B40 Cluster: HAD-superfamily hydrolase, subfamily IA... 33 2.8
UniRef50_UPI0000F1E351 Cluster: PREDICTED: hypothetical protein;... 31 6.4
UniRef50_A6R9Y3 Cluster: Putative uncharacterized protein; n=1; ... 31 6.4
UniRef50_A2ELE1 Cluster: Putative uncharacterized protein; n=1; ... 31 8.5
UniRef50_A0CWF7 Cluster: Chromosome undetermined scaffold_3, who... 31 8.5
>UniRef50_Q9GP16 Cluster: 60S ribosomal protein L31; n=27;
Coelomata|Rep: 60S ribosomal protein L31 - Heliothis
virescens (Noctuid moth) (Owlet moth)
Length = 124
Score = 245 bits (599), Expect = 3e-64
Identities = 117/121 (96%), Positives = 118/121 (97%)
Frame = +3
Query: 39 MAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 218
MAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD+R
Sbjct: 1 MAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVR 60
Query: 219 VDTRLNKFLWSKGVRNVPFRVRVRLSRXRNDDEXSAHKLFTLVTYVPVASIKGLXTENVD 398
VDTRLNKFLWSKGVRNVPFRVRVRLSR RNDDE SAHKLFTLVTYVPVASIKGL TENVD
Sbjct: 61 VDTRLNKFLWSKGVRNVPFRVRVRLSRRRNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 120
Query: 399 A 401
A
Sbjct: 121 A 121
>UniRef50_P62899 Cluster: 60S ribosomal protein L31; n=48;
Metazoa|Rep: 60S ribosomal protein L31 - Homo sapiens
(Human)
Length = 125
Score = 196 bits (478), Expect = 1e-49
Identities = 89/120 (74%), Positives = 107/120 (89%), Gaps = 1/120 (0%)
Frame = +3
Query: 42 AKPKGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 218
AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63
Query: 219 VDTRLNKFLWSKGVRNVPFRVRVRLSRXRNDDEXSAHKLFTLVTYVPVASIKGLXTENVD 398
+DTRLNK +W+KG+RNVP+R+RVRLSR RN+DE S +KL+TLVTYVPV + K L T NVD
Sbjct: 64 IDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
>UniRef50_Q9GN74 Cluster: 60S ribosomal protein L31; n=20;
Coelomata|Rep: 60S ribosomal protein L31 - Aedes aegypti
(Yellowfever mosquito)
Length = 124
Score = 187 bits (456), Expect = 6e-47
Identities = 86/121 (71%), Positives = 105/121 (86%)
Frame = +3
Query: 39 MAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 218
MAK K E+K KSAINEVVTRE T+NL++RLH VG+KKRAPRA+K +RKFAEK+MGT D+R
Sbjct: 1 MAKTKTEKKAKSAINEVVTRECTINLNRRLHKVGYKKRAPRAVKIVRKFAEKEMGTNDVR 60
Query: 219 VDTRLNKFLWSKGVRNVPFRVRVRLSRXRNDDEXSAHKLFTLVTYVPVASIKGLXTENVD 398
+DTRLNK LW +G+RN PFR+RVRLSR RNDDE S +KL+TLVTYVPV++ K L TENV+
Sbjct: 61 IDTRLNKALWHRGIRNPPFRIRVRLSRRRNDDEDSPNKLYTLVTYVPVSTFKELQTENVE 120
Query: 399 A 401
+
Sbjct: 121 S 121
>UniRef50_Q9V597 Cluster: 60S ribosomal protein L31; n=173;
Eukaryota|Rep: 60S ribosomal protein L31 - Drosophila
melanogaster (Fruit fly)
Length = 124
Score = 186 bits (454), Expect = 1e-46
Identities = 84/121 (69%), Positives = 104/121 (85%)
Frame = +3
Query: 39 MAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 218
M K KGE+ KSAINEVVTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R
Sbjct: 1 MTKTKGEKINKSAINEVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVR 60
Query: 219 VDTRLNKFLWSKGVRNVPFRVRVRLSRXRNDDEXSAHKLFTLVTYVPVASIKGLXTENVD 398
+DTRLNK +WSKG+R+ PFR+RVRL+R RNDDE S +KL+T VTYVPV++ K L TENV+
Sbjct: 61 IDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLYTYVTYVPVSTFKNLQTENVE 120
Query: 399 A 401
+
Sbjct: 121 S 121
>UniRef50_P51420 Cluster: 60S ribosomal protein L31-3; n=12;
Eukaryota|Rep: 60S ribosomal protein L31-3 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 119
Score = 142 bits (344), Expect = 2e-33
Identities = 66/116 (56%), Positives = 88/116 (75%), Gaps = 2/116 (1%)
Frame = +3
Query: 57 ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLN 236
E+KG+ EV+TREYT+NLH+RLH FKK+AP+AIKEIRKFAEK MGT D+RVD +LN
Sbjct: 3 EKKGRK--EEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 60
Query: 237 KFLWSKGVRNVPFRVRVRLSRXRNDDEXSAHKLFTLVTY--VPVASIKGLXTENVD 398
K +WSKG+R P R+RVR++R RNDDE + + F+LVT +P + GL T+ ++
Sbjct: 61 KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116
>UniRef50_Q4PI65 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 175
Score = 139 bits (337), Expect = 2e-32
Identities = 67/119 (56%), Positives = 88/119 (73%), Gaps = 1/119 (0%)
Frame = +3
Query: 45 KPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVD 224
K + +K +SA+N+VVTREYTVNLHKR+H V FKKRAPRAIKE+ FA+K MGT D+R+D
Sbjct: 55 KSQKGKKTRSALNDVVTREYTVNLHKRVHDVAFKKRAPRAIKEVVAFAQKAMGTKDVRLD 114
Query: 225 TRLNKFLWSKGVRNVPFRVRVRLSRXRNDDEXSAHKLFT-LVTYVPVASIKGLXTENVD 398
+LN+ +W GV+N P R+RVRL R RNDDE + KL+T V + + + KGL T +D
Sbjct: 115 PKLNQEVWKYGVKNFPRRLRVRLERKRNDDEGAKEKLYTYAVPVLGLGTAKGLQTTVID 173
>UniRef50_UPI00005A08CD Cluster: PREDICTED: similar to ribosomal
protein L31; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L31 - Canis familiaris
Length = 130
Score = 130 bits (315), Expect = 8e-30
Identities = 54/69 (78%), Positives = 66/69 (95%)
Frame = +3
Query: 93 TREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVP 272
TREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R+DTRLNK +W+KG+RNVP
Sbjct: 60 TREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVP 119
Query: 273 FRVRVRLSR 299
+R+ VRLSR
Sbjct: 120 YRIHVRLSR 128
>UniRef50_UPI00005A10F5 Cluster: PREDICTED: similar to ribosomal
protein L31; n=2; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L31 - Canis familiaris
Length = 175
Score = 129 bits (312), Expect = 2e-29
Identities = 56/85 (65%), Positives = 73/85 (85%)
Frame = +3
Query: 144 KKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFRVRVRLSRXRNDDEXS 323
+K RA+K+IRKFA K++GTPD+R+DTRLNK +W+KG+RNVP+R+RVRLSR RN+DE S
Sbjct: 89 RKERRRALKDIRKFAMKELGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDS 148
Query: 324 AHKLFTLVTYVPVASIKGLXTENVD 398
+KL+TLVTYVPV ++K L T NVD
Sbjct: 149 PNKLYTLVTYVPVTTLKNLQTVNVD 173
>UniRef50_Q6Y207 Cluster: Ribosomal protein L31; n=9;
Euteleostomi|Rep: Ribosomal protein L31 - Pagrus major
(Red sea bream) (Chrysophrys major)
Length = 91
Score = 123 bits (297), Expect = 1e-27
Identities = 57/79 (72%), Positives = 67/79 (84%)
Frame = +3
Query: 162 AIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFRVRVRLSRXRNDDEXSAHKLFT 341
A IRKFA K+MGTPD+R+DTRLNK +WSKGVRNVP+R+RVRLSR RN+DE S +KL+T
Sbjct: 11 APSRIRKFAVKEMGTPDVRMDTRLNKAVWSKGVRNVPYRMRVRLSRKRNEDEDSPNKLYT 70
Query: 342 LVTYVPVASIKGLXTENVD 398
LVTYVPV + KGL T NVD
Sbjct: 71 LVTYVPVTTCKGLQTVNVD 89
>UniRef50_Q22DH9 Cluster: 60S ribosomal protein L31, putative; n=1;
Tetrahymena thermophila SB210|Rep: 60S ribosomal protein
L31, putative - Tetrahymena thermophila SB210
Length = 111
Score = 122 bits (293), Expect = 4e-27
Identities = 54/99 (54%), Positives = 73/99 (73%)
Frame = +3
Query: 105 TVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFRVR 284
TVNLHK+ H + FKK+APRAI+EI A+K MGT D+R+DT LNKF+WS G+RN+P RVR
Sbjct: 12 TVNLHKQCHKISFKKKAPRAIREIVAIAKKTMGTDDVRIDTELNKFIWSNGIRNIPRRVR 71
Query: 285 VRLSRXRNDDEXSAHKLFTLVTYVPVASIKGLXTENVDA 401
VRL + +N++E + + +TLV ++ V S GL TE A
Sbjct: 72 VRLCKRKNEEEGAQSQFYTLVQHLQVDSYHGLLTEKTKA 110
>UniRef50_Q7RSL1 Cluster: Ribosomal protein L31e, putative; n=7;
Apicomplexa|Rep: Ribosomal protein L31e, putative -
Plasmodium yoelii yoelii
Length = 142
Score = 117 bits (282), Expect = 8e-26
Identities = 54/99 (54%), Positives = 72/99 (72%)
Frame = +3
Query: 93 TREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVP 272
T+ T+NL K H V +K++APRAIKEI+ A K M T D+R+D +LNKF+WSKG+RN P
Sbjct: 39 TKVITINLSKLTHDVCYKRKAPRAIKEIKNIAGKLMHTKDVRLDVKLNKFIWSKGIRNPP 98
Query: 273 FRVRVRLSRXRNDDEXSAHKLFTLVTYVPVASIKGLXTE 389
RVRV++ R RN+DE S +++TLV +V V S KGL E
Sbjct: 99 KRVRVKIERVRNEDEDSKERMYTLVQHVMVDSYKGLVNE 137
>UniRef50_UPI000049A444 Cluster: 60S ribosomal protein L31; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L31 - Entamoeba histolytica HM-1:IMSS
Length = 150
Score = 112 bits (269), Expect = 3e-24
Identities = 59/123 (47%), Positives = 81/123 (65%)
Frame = +3
Query: 30 KITMAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTP 209
K+ KP E K K +TRE T+++HK LH FKKRAP+AIK IR A K M T
Sbjct: 28 KVGNKKPSKEIKAKEMAP--ITREMTIHMHKYLHKESFKKRAPKAIKIIRFLAIKTMKTH 85
Query: 210 DIRVDTRLNKFLWSKGVRNVPFRVRVRLSRXRNDDEXSAHKLFTLVTYVPVASIKGLXTE 389
+++ D LN+F+WS+G+R+V R+RVR++R + E K +TLV+YVPVAS KGL T+
Sbjct: 86 NVKFDMGLNQFIWSQGIRSVADRIRVRMARLPMEGEEG--KFYTLVSYVPVASFKGLVTK 143
Query: 390 NVD 398
V+
Sbjct: 144 TVE 146
>UniRef50_UPI0000D9FB71 Cluster: PREDICTED: similar to ribosomal
protein L31, partial; n=1; Macaca mulatta|Rep:
PREDICTED: similar to ribosomal protein L31, partial -
Macaca mulatta
Length = 129
Score = 106 bits (254), Expect = 2e-22
Identities = 51/102 (50%), Positives = 71/102 (69%)
Frame = +3
Query: 90 VTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNV 269
VTR YT N+ K + GVGFKKR P+A+KEI+KFA K+M T D+R+DTR NK +W+KG NV
Sbjct: 25 VTRGYTSNIQKHIRGVGFKKRGPQALKEIQKFAMKEMRTLDVRLDTRQNKAVWNKGTSNV 84
Query: 270 PFRVRVRLSRXRNDDEXSAHKLFTLVTYVPVASIKGLXTENV 395
+ V + N + + HKL+TL+TYVPV + K L +++
Sbjct: 85 SW---VPICGFENMMKLNIHKLYTLITYVPVTTFKNLLIKSL 123
>UniRef50_Q1X7K2 Cluster: Ribosomal protein L31; n=7;
Trypanosomatidae|Rep: Ribosomal protein L31 - Leishmania
major
Length = 188
Score = 95.1 bits (226), Expect = 5e-19
Identities = 48/106 (45%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Frame = +3
Query: 84 EVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVR 263
+ V+ E T++L K L F KRAP AIK I+ F + M T D R+D LN ++W KGV+
Sbjct: 82 DAVSMEATIHLSKLLKKKTFSKRAPLAIKRIKAFVGRLMKTKDNRIDASLNTYIWHKGVK 141
Query: 264 NVPFRVRVRLSRXRNDDEXSAHK-LFTLVTYVPVASIKGLXTENVD 398
VP RVRV + R E + HK +T+++ VPVAS KGL T+ V+
Sbjct: 142 GVPGRVRVLIQRKSETTEGNKHKHFYTVISNVPVASFKGLTTKTVE 187
>UniRef50_UPI0000DA1BEE Cluster: PREDICTED: similar to ribosomal
protein L31; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein L31 - Rattus norvegicus
Length = 163
Score = 86.6 bits (205), Expect = 2e-16
Identities = 40/62 (64%), Positives = 49/62 (79%)
Frame = +3
Query: 42 AKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRV 221
AK G++KG SAINE+VTREYT+N+HKR+H VGFK AP A+KEI KFA K MGTP+ +
Sbjct: 4 AKKGGKKKGHSAINEMVTREYTINIHKRIHEVGFKMHAPWALKEIWKFAIKAMGTPEFVI 63
Query: 222 DT 227
T
Sbjct: 64 CT 65
>UniRef50_UPI00005A550D Cluster: PREDICTED: similar to ribosomal
protein L31; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L31 - Canis familiaris
Length = 141
Score = 86.2 bits (204), Expect = 2e-16
Identities = 41/78 (52%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Frame = +3
Query: 138 GFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVR-NVPFRVRVRLSRXRNDD 314
GF++ P +KEIRKFA K+MGTPD+ +D NK + ++G+R NVP R+ VRLSR +D
Sbjct: 49 GFREACPSGLKEIRKFAMKEMGTPDVHMDPGFNKAVQAEGIRNNVPHRIPVRLSRKCKED 108
Query: 315 EXSAHKLFTLVTYVPVAS 368
E S +KL+ LVT VPV +
Sbjct: 109 EDSPNKLYRLVTCVPVTT 126
>UniRef50_UPI0001505641 Cluster: 60S ribosomal protein L31 (RPL31C);
n=1; Arabidopsis thaliana|Rep: 60S ribosomal protein L31
(RPL31C) - Arabidopsis thaliana
Length = 85
Score = 85.4 bits (202), Expect = 4e-16
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +3
Query: 57 ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVD 224
E+KG+ EV+TREYT+NLH+RLH FKK+AP+AIKEIRKFAEK MGT D+RVD
Sbjct: 3 EKKGRK--EEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVD 56
>UniRef50_A0CQV2 Cluster: Chromosome undetermined scaffold_24, whole
genome shotgun sequence; n=9; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_24,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 372
Score = 72.1 bits (169), Expect = 4e-12
Identities = 33/82 (40%), Positives = 51/82 (62%)
Frame = +3
Query: 144 KKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFRVRVRLSRXRNDDEXS 323
KKR + + A K M T D+R+D LN+ +W++G+RN+P R+RVRL R + +++
Sbjct: 286 KKRPQKLSLILLISARKNMLTEDVRIDPSLNEAVWARGIRNLPRRIRVRLQRKKKEEDDG 345
Query: 324 AHKLFTLVTYVPVASIKGLXTE 389
K +TL +VPV + GL TE
Sbjct: 346 KGKYYTLAQHVPVDTFDGLKTE 367
>UniRef50_Q7QSE2 Cluster: GLP_426_16236_15916; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_426_16236_15916 - Giardia lamblia
ATCC 50803
Length = 106
Score = 71.7 bits (168), Expect = 5e-12
Identities = 41/100 (41%), Positives = 58/100 (58%)
Frame = +3
Query: 90 VTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNV 269
+ E+T+ L+K + G KK AP AI+ IR EK D+R+D +N F+WS+G+R+V
Sbjct: 3 IVYEHTIRLNKAVRGKPSKKAAPIAIRAIRAQVEKLAKVEDVRLDPSVNVFVWSRGIRHV 62
Query: 270 PFRVRVRLSRXRNDDEXSAHKLFTLVTYVPVASIKGLXTE 389
P R+R+ + R DDE HK F V V + K L TE
Sbjct: 63 PRRIRLEV-RLEGDDE---HK-FAYVINKDVENFKHLTTE 97
>UniRef50_A2EKX9 Cluster: Ribosomal protein L31e, putative; n=6;
Trichomonas vaginalis G3|Rep: Ribosomal protein L31e,
putative - Trichomonas vaginalis G3
Length = 133
Score = 69.7 bits (163), Expect = 2e-11
Identities = 40/99 (40%), Positives = 53/99 (53%)
Frame = +3
Query: 99 EYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFR 278
E T++L K +H + RA RAIK I A+K M T +++D LN +W G P R
Sbjct: 34 ETTIHLQKAVHNTTRRFRAERAIKVITAAAKKMMHTEVVKIDPELNSRIWIHGKNCPPAR 93
Query: 279 VRVRLSRXRNDDEXSAHKLFTLVTYVPVASIKGLXTENV 395
VRV R DE A K+ T+ +Y VAS GL T+ V
Sbjct: 94 VRVVFE--RKADEEDAEKMVTIASYKNVASFNGLQTQKV 130
>UniRef50_Q06740 Cluster: Putative uncharacterized protein; n=1;
Saccharomyces cerevisiae|Rep: Putative uncharacterized
protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 77
Score = 62.1 bits (144), Expect = 4e-09
Identities = 36/61 (59%), Positives = 39/61 (63%)
Frame = -3
Query: 268 TFLTPLDQRNLFKRVSTRMSGVPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVT 89
T LT L Q F + R S VP+C ANF ISL ALGA FL TP + LCKL VYSRVT
Sbjct: 17 TPLTLLFQIAWFNSGARRTSSVPMCNLANFLISLTALGALFLKETPCNLLCKLMVYSRVT 76
Query: 88 T 86
T
Sbjct: 77 T 77
>UniRef50_P54009 Cluster: 50S ribosomal protein L31e; n=7;
Euryarchaeota|Rep: 50S ribosomal protein L31e -
Methanococcus jannaschii
Length = 87
Score = 57.6 bits (133), Expect = 9e-08
Identities = 26/71 (36%), Positives = 44/71 (61%)
Frame = +3
Query: 96 REYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPF 275
R YT+ L ++ KRAPRAIK+I++F ++ M +++D LN+ +W +G++ P
Sbjct: 9 RIYTIPLRDVINKSVRTKRAPRAIKKIKQFLKRHMKAEIVKIDNELNEKIWERGIQKPPA 68
Query: 276 RVRVRLSRXRN 308
RVRV+ + N
Sbjct: 69 RVRVKAVKEGN 79
>UniRef50_Q98RR6 Cluster: 60S ribosomal protein L31; n=1; Guillardia
theta|Rep: 60S ribosomal protein L31 - Guillardia theta
(Cryptomonas phi)
Length = 97
Score = 55.6 bits (128), Expect = 3e-07
Identities = 28/63 (44%), Positives = 39/63 (61%)
Frame = +3
Query: 111 NLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFRVRVR 290
N+HKR+ G F KR AIKEI+KFA K +IR++ LN + S G N P ++++R
Sbjct: 15 NIHKRVFGKKFNKRVSIAIKEIKKFAWKLTKCNNIRIEPELNMQICSNGSSNPPNKLKLR 74
Query: 291 LSR 299
SR
Sbjct: 75 FSR 77
>UniRef50_UPI00015BAD97 Cluster: LSU ribosomal protein L31E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L31E - Ignicoccus hospitalis KIN4/I
Length = 101
Score = 53.6 bits (123), Expect = 1e-06
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Frame = +3
Query: 102 YTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGT--PDIRVDTRLNKFLWSKGVRNVPF 275
YT+NL +RL+ RA RA++ +R+F + G D+++D +N +LWS + P
Sbjct: 10 YTINL-RRLYWGRRSNRAKRAVRMVREFVARHFGVEPEDVKIDNTVNNYLWSGSITKPPA 68
Query: 276 RVRVRLSRXRNDDEXSAHKLFTLVTYVPVASIK 374
RV+V ++ E K V YV +A++K
Sbjct: 69 RVQVYVTVKTESGEEGERK----VAYVTLANVK 97
>UniRef50_Q8PYQ4 Cluster: 50S ribosomal protein L31e; n=11;
Euryarchaeota|Rep: 50S ribosomal protein L31e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 93
Score = 50.4 bits (115), Expect = 1e-05
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = +3
Query: 66 GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTP--DIRVDTRLNK 239
GK A + V + YT+ L + + V KRA RA+KE+R F + M T +++D +N+
Sbjct: 3 GKMADDMVKEQIYTIPL-REVRKVPAWKRAGRAVKEVRGFLVRHMKTEAEQVKLDKTINE 61
Query: 240 FLWSKGVRNVPFRVRVR 290
LW KG P +RVR
Sbjct: 62 CLWEKGCEKPPLSIRVR 78
>UniRef50_A0RW54 Cluster: Ribosomal protein L31E; n=2;
Thermoprotei|Rep: Ribosomal protein L31E - Cenarchaeum
symbiosum
Length = 217
Score = 48.8 bits (111), Expect = 4e-05
Identities = 25/68 (36%), Positives = 41/68 (60%)
Frame = +3
Query: 96 REYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPF 275
R YT+ L K L +RA RAI I++FA M +IR+D ++ +W +G+++ P
Sbjct: 7 RVYTIPLGKVLLSPD-NRRAMRAINMIKEFATHHMKNANIRIDEEVSHQIWLRGIKSPPR 65
Query: 276 RVRVRLSR 299
++RVR+ R
Sbjct: 66 KIRVRMVR 73
>UniRef50_Q8SSC8 Cluster: 60S ribosomal protein L31; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L31
- Encephalitozoon cuniculi
Length = 111
Score = 48.4 bits (110), Expect = 5e-05
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Frame = +3
Query: 72 SAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTP-DIRVDTRLNKFLW 248
S I E T E TVNL + + + K+A + ++ +++ +K + V LN FL+
Sbjct: 3 SKIEENQTVEMTVNLRRICSRLPWTKKASKVVRMLKREIQKHFREEIGVVVTNDLNNFLY 62
Query: 249 SKGVRNVPFRVRVRLSRXRNDDEXSAHKLFTLVTYVPVASIKGLXTENVD 398
S+G++ +P +VRVR+++ + + L T V V S K L VD
Sbjct: 63 SRGIKKIPNKVRVRVTKETSLKNAEENVLKT--DLVVVGSFKNLKEVIVD 110
>UniRef50_Q74MC9 Cluster: NEQ364; n=1; Nanoarchaeum equitans|Rep:
NEQ364 - Nanoarchaeum equitans
Length = 79
Score = 47.6 bits (108), Expect = 9e-05
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +3
Query: 99 EYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFR 278
EYTVNL K + KR +A+K +++F + +++ LNKF+W +G R P +
Sbjct: 2 EYTVNLRKAVLVTSRFKRTKKAVKALKEFVMRHTKAKIVKISQELNKFIWKRGGRKPPTK 61
Query: 279 VRVRLSR 299
+ +++
Sbjct: 62 FTIVVTK 68
>UniRef50_Q8U3S7 Cluster: 50S ribosomal protein L31e; n=5;
Thermococcaceae|Rep: 50S ribosomal protein L31e -
Pyrococcus furiosus
Length = 95
Score = 47.6 bits (108), Expect = 9e-05
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +3
Query: 102 YTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFRV 281
+TV + K V KRAPRA+K +R+F + ++ +D ++N+ +W +G+ P ++
Sbjct: 11 FTVPIKKIKKIVPRWKRAPRAVKFVREFVARHAKAQEVIIDPKVNEKIWERGIEKPPSKL 70
Query: 282 RVRL 293
RV++
Sbjct: 71 RVKV 74
>UniRef50_O28213 Cluster: 50S ribosomal protein L31e; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L31e -
Archaeoglobus fulgidus
Length = 88
Score = 46.8 bits (106), Expect = 2e-04
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 87 VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTP--DIRVDTRLNKFLWSKGV 260
VV R Y++ L ++ RA +A K +RKF + M ++++DT +N+ +W +G
Sbjct: 5 VVERVYSIRLRHKMKRYPRWLRAKKAAKYVRKFLSRHMKVEPENVKIDTAVNEKIWERGA 64
Query: 261 RNVPFRVRVR 290
P ++RVR
Sbjct: 65 EKPPTKIRVR 74
>UniRef50_Q9YD25 Cluster: 50S ribosomal protein L31e; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L31e - Aeropyrum
pernix
Length = 104
Score = 46.8 bits (106), Expect = 2e-04
Identities = 21/78 (26%), Positives = 42/78 (53%)
Frame = +3
Query: 102 YTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFRV 281
Y VNL +R++ +RA RA++ +R+F + ++ +D LN ++WS+ P RV
Sbjct: 9 YVVNL-RRVYWGRRTRRAIRAVRMVREFVRRHTKADEVVIDNELNNYIWSRSREKPPARV 67
Query: 282 RVRLSRXRNDDEXSAHKL 335
++ +S + E ++
Sbjct: 68 KIIVSIREEEPEEGGERI 85
>UniRef50_Q00ZX3 Cluster: 60S ribosomal protein L31a; n=1;
Ostreococcus tauri|Rep: 60S ribosomal protein L31a -
Ostreococcus tauri
Length = 95
Score = 45.6 bits (103), Expect = 4e-04
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 26/93 (27%)
Frame = +3
Query: 198 MGTPDIRVDTRLNKFLWSKGVRN-------------------------VPFRVRVRLSRX 302
M T D+R+D +LNK +WSKG+RN VP R+RV++SR
Sbjct: 1 MKTSDVRIDVKLNKAVWSKGIRNVRFERLSARSAKGRLTRFTFSSRAQVPKRIRVQISRK 60
Query: 303 RNDDEXSAHKLFTLVTYVPVAS-IKGLXTENVD 398
ND++ + L++ VT V + GL T+ +D
Sbjct: 61 HNDNKDADEDLYSYVTVVDTPNGFSGLGTDVID 93
>UniRef50_Q8ZTU2 Cluster: 50S ribosomal protein L31e; n=4;
Pyrobaculum|Rep: 50S ribosomal protein L31e -
Pyrobaculum aerophilum
Length = 91
Score = 43.6 bits (98), Expect = 0.001
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +3
Query: 87 VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD--IRVDTRLNKFLWSKGV 260
V++REY +NL +R + V KRA A+ IR+F + + +++ LN LW++ +
Sbjct: 8 VLSREYVINL-RRAYEVSRTKRAKYAVGLIRRFVARHLKVEPKAVKIGQLLNTALWARSI 66
Query: 261 RNVPFRVRVRLSR 299
P +VRV + +
Sbjct: 67 EKPPRKVRVAVEK 79
>UniRef50_Q0W5H1 Cluster: 50S ribosomal protein L31E; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L31E -
Uncultured methanogenic archaeon RC-I
Length = 91
Score = 40.7 bits (91), Expect = 0.011
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +3
Query: 81 NEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD--IRVDTRLNKFLWSK 254
N+ + YT+ L + + KR+ +AIK IR++ K M + I++ + LN+ +W
Sbjct: 5 NKATEQIYTIPL-REVKDYPVWKRSNKAIKVIREYLSKHMKIEEEKIKISSELNEAVWEH 63
Query: 255 GVRNVPFRVRVRLSR 299
G+ P VRV+ R
Sbjct: 64 GIEKPPSAVRVKAVR 78
>UniRef50_A2X8Z3 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 93
Score = 40.3 bits (90), Expect = 0.014
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 81 NEVVTREYTVNLHKRLHG 134
+EVVTREYT+NLHKRLHG
Sbjct: 13 DEVVTREYTINLHKRLHG 30
>UniRef50_P18138 Cluster: 50S ribosomal protein L31e; n=6;
Halobacteriaceae|Rep: 50S ribosomal protein L31e -
Haloarcula marismortui (Halobacterium marismortui)
Length = 92
Score = 39.9 bits (89), Expect = 0.018
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 147 KRAPRAIKEIRKFAEKQMGTPD--IRVDTRLNKFLWSKGVRNVPFRVRVRLSRXRNDDE 317
KRA +A+ IR+ K + +R+D +N+ W++G N P ++RVR +R + E
Sbjct: 25 KRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEEEGE 83
>UniRef50_A3H875 Cluster: Ribosomal protein L31e; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein L31e -
Caldivirga maquilingensis IC-167
Length = 86
Score = 37.1 bits (82), Expect = 0.13
Identities = 19/75 (25%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +3
Query: 81 NEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD--IRVDTRLNKFLWSK 254
NE++ T+NL + + + RAP A + I++ + + + ++++ LN LWS+
Sbjct: 4 NEIIL---TINL-RDVKEASRRIRAPYAARFIKRIIARYVKVDEDKVKLNENLNNLLWSR 59
Query: 255 GVRNVPFRVRVRLSR 299
G++ P R++V++++
Sbjct: 60 GIQKPPSRIKVKVTK 74
>UniRef50_A3DNH4 Cluster: 50S ribosomal protein L31e; n=2;
Desulfurococcales|Rep: 50S ribosomal protein L31e -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 102
Score = 36.7 bits (81), Expect = 0.17
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +3
Query: 90 VTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD-IRVDTRLNKFLWSKGVRN 266
+TR V KR++ RA RA++ IRK+ + + I +D +N+++WS+
Sbjct: 7 ITRSIHVIPLKRVYWGRRTNRADRAVRLIRKYVRRHFKEAEKIIIDPAVNEYVWSRSREK 66
Query: 267 VPFRVRVRLSRXRNDDEXSAHKLFTL 344
P RV V + R D E K+ +
Sbjct: 67 PPRRVIVEI---RFDKEEKTAKVLLI 89
>UniRef50_Q6L2L1 Cluster: 50S ribosomal protein L31e; n=2;
Thermoplasmatales|Rep: 50S ribosomal protein L31e -
Picrophilus torridus
Length = 89
Score = 33.5 bits (73), Expect = 1.6
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +3
Query: 147 KRAPRAIKEIRKFAEKQMGTPDIR--VDTRLNKFLWSKGVRNVPFRVRVRL 293
+RA +IK ++ + + R VD ++N+ +WS+G R VP RV +++
Sbjct: 26 RRADTSIKMLKDAVARYTKSDRDRIWVDNKVNELIWSRGRRKVPTRVNIKV 76
>UniRef50_Q820F4 Cluster: Holliday junction ATP-dependent DNA
helicase ruvA; n=6; Actinomycetales|Rep: Holliday
junction ATP-dependent DNA helicase ruvA - Streptomyces
avermitilis
Length = 203
Score = 33.1 bits (72), Expect = 2.1
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 24 KLKITMAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKR-APRAIKEIRKFAEKQM 200
+LK + +P G G AI VT + LH L G+G+ R A A+ + AE
Sbjct: 126 ELKDRLGEPLGT--GGPAIGRAVTTGWREQLHAALIGLGYATREADEAVAAVAPQAEAAG 183
Query: 201 GTPDI 215
GTP +
Sbjct: 184 GTPQV 188
>UniRef50_Q02B40 Cluster: HAD-superfamily hydrolase, subfamily IA,
variant 3; n=1; Solibacter usitatus Ellin6076|Rep:
HAD-superfamily hydrolase, subfamily IA, variant 3 -
Solibacter usitatus (strain Ellin6076)
Length = 202
Score = 32.7 bits (71), Expect = 2.8
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 102 YTV-NLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWS 251
YT + KRL G G +R + E R F E+ T D+RVD +WS
Sbjct: 31 YTAAEIPKRLAGTGLVERFETGLMEPRDFVEEMSRTLDLRVDYDQFSQIWS 81
>UniRef50_UPI0000F1E351 Cluster: PREDICTED: hypothetical protein; n=3;
Danio rerio|Rep: PREDICTED: hypothetical protein - Danio
rerio
Length = 869
Score = 31.5 bits (68), Expect = 6.4
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = +3
Query: 6 VEFRYTKLKITMAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKF 185
VE+ YT K+ K +G K E+ + + L K+R E+
Sbjct: 766 VEYYYTMKKVKKFKQRGRTVNKKD-GEIFVFKCSQELQSEQTDRNTKQRTKATEGEMSAR 824
Query: 186 AEKQMGTPDIRVDTRLNKFLWSK 254
AEK +P +R+DT +++ W++
Sbjct: 825 AEKGHRSPSVRIDTN-SRWWWAR 846
>UniRef50_A6R9Y3 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 474
Score = 31.5 bits (68), Expect = 6.4
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -2
Query: 287 HTDTEGNISDSLRPKEFV*ASVYSNVRSSHLFFSELSDFFDCSWGTLFKSNTM 129
HT TEG++ + P A++ R ++++FS + +D G ++ + M
Sbjct: 242 HTPTEGSLQTAPEPATVAKANIVEKERRNNMYFSAIGFIYDVKRGPFWEHSPM 294
>UniRef50_A2ELE1 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1419
Score = 31.1 bits (67), Expect = 8.5
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +3
Query: 57 ERKGKSAIN---EVVTREYTVNLHKRLHGVGFKK----RAPRAIKEIRKFAEKQMGTPDI 215
E K KSA N + + ++ V + + G+ + + P+ EIRK + + D+
Sbjct: 842 EHKKKSAENLKISINSPQFIVLAFENMRDFGYGRYDTFKRPKENAEIRKICQNILSKMDV 901
Query: 216 RVDTRLNKFLWSKGVR 263
++DT +KFL S +R
Sbjct: 902 QIDTSHSKFLLSISLR 917
>UniRef50_A0CWF7 Cluster: Chromosome undetermined scaffold_3, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_3,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 213
Score = 31.1 bits (67), Expect = 8.5
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Frame = +3
Query: 12 FRYTKLKITMAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEI-RKFA 188
F K+K+T+ PK E + + T + + L G+ +AP++ + I K
Sbjct: 2 FSERKVKLTLHLPKLESCAQFESDVYTTTSRSSKDCQLLIGILSISKAPKSDRRIVHKHT 61
Query: 189 EKQMGTPD-IRVDTRLNKFLWSKGVRNVPFRVRVRLSRXRNDDEXSAHKLFTLVTYVPVA 365
QM T + + + T + L +K ++N+P+ ++ N + S+H + + P
Sbjct: 62 VTQMNTSNQLHLYTPKYESLQAKRLKNIPYELKYFTPNLPNKNFKSSHLMNNKLLETPKV 121
Query: 366 SIK 374
+I+
Sbjct: 122 TIQ 124
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 364,018,255
Number of Sequences: 1657284
Number of extensions: 6376052
Number of successful extensions: 12976
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 12769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12966
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17349842203
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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