Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_C01
(402 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0140 + 12255418-12255512,12257514-12257793 149 8e-37
08_02_1181 - 24985963-24986242,24987109-24987197 147 2e-36
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649 129 7e-31
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602... 27 5.6
01_01_1216 - 9827190-9827531 27 5.6
09_05_0007 - 20036981-20037159,20037690-20037943,20038103-200383... 27 7.3
03_02_0178 + 6195402-6199158,6199438-6200003 27 7.3
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 26 9.7
04_01_0359 + 4711289-4713052,4713423-4713950 26 9.7
01_03_0147 - 13125065-13126679,13126802-13127664 26 9.7
>06_02_0140 + 12255418-12255512,12257514-12257793
Length = 124
Score = 149 bits (361), Expect = 8e-37
Identities = 71/118 (60%), Positives = 92/118 (77%), Gaps = 2/118 (1%)
Frame = +3
Query: 51 KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTR 230
K +R G + +EVVTREYT+NLHKRLHG FKK+AP AIKEIRKFA+K MGT D+RVD +
Sbjct: 4 KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVK 63
Query: 231 LNKFLWSKGVRNVPFRVRVRLSRXRNDDEXSAHKLFTLVTY--VPVASIKGLXTENVD 398
LNK +WS G+R+VP RVRVR++R RND+E + +L++LVT VP +KGL T+ V+
Sbjct: 64 LNKHIWSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121
>08_02_1181 - 24985963-24986242,24987109-24987197
Length = 122
Score = 147 bits (357), Expect = 2e-36
Identities = 72/117 (61%), Positives = 91/117 (77%), Gaps = 3/117 (2%)
Frame = +3
Query: 57 ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRL 233
E+KG +A E VVTREYT+NLHKRLH FKK+AP AIKEIRKFA+K MGT D+RVD +L
Sbjct: 3 EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKL 62
Query: 234 NKFLWSKGVRNVPFRVRVRLSRXRNDDEXSAHKLFTLVTY--VPVASIKGLXTENVD 398
NK +WS G+R+VP RVRVR++R RND+E + +L++LVT VP +KGL T+ VD
Sbjct: 63 NKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119
>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
Length = 139
Score = 129 bits (312), Expect = 7e-31
Identities = 67/124 (54%), Positives = 87/124 (70%), Gaps = 18/124 (14%)
Frame = +3
Query: 81 NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFAEKQMGTPD 212
+EVVTREYT+NLHKRLHG FKK+AP AIKEIRKFA+K MGT D
Sbjct: 13 DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTD 72
Query: 213 IRVDTRLNKFLWSKGVRNVPFRVRVRLSRXRNDDEXSAHKLFTLVTY--VPVASIKGLXT 386
IR+D +LNK +W+ G+R+VP RVRVR+SR RND+E + +L++LVT +P +KGL T
Sbjct: 73 IRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGT 132
Query: 387 ENVD 398
+ V+
Sbjct: 133 KVVE 136
>01_06_0668 +
31058497-31059510,31059609-31059676,31060189-31060270,
31060339-31060431,31060516-31060668,31060900-31060968,
31061091-31061184,31061594-31061677,31062133-31062221,
31062340-31062456,31062567-31062707,31062823-31063005
Length = 728
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 108 VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 212
+N+ ++G GF A + E+ K A KQ+ PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475
>01_01_1216 - 9827190-9827531
Length = 113
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 144 KKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFR 278
KK+ + K+ +K + +P I +DTR+ K + NV FR
Sbjct: 45 KKKKKKKKKKKKKKKHMKNASPCISMDTRIKKLAMRPIIGNVSFR 89
>09_05_0007 -
20036981-20037159,20037690-20037943,20038103-20038355,
20038447-20038640,20039122-20039252,20039378-20039488,
20039834-20039932
Length = 406
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 61 LSPLGLAIVILSFVYRNSTF 2
LSP GLA V+L F + S+F
Sbjct: 300 LSPFGLATVLLLFAFHTSSF 319
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 21 TKLKITMAKPKGERKGKSAINEVVTREYTVNL 116
T L + M KP E KGK +V+++E + +
Sbjct: 704 TALNLIMGKPSAEDKGKGIAFDVLSKEEDIGV 735
>07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 258 VRNVPFRVRVRLSRXRNDDEXSA 326
VRNV +++ RLS+ NDD+ A
Sbjct: 1035 VRNVANKIKSRLSQLNNDDKRGA 1057
>04_01_0359 + 4711289-4713052,4713423-4713950
Length = 763
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 269 NISDSLRPKEFV*ASVYSNVRSSHLFFSELSDFFDCSW 156
NI R +F+ A Y ++ L+F+ SD F W
Sbjct: 48 NILQCQRVSDFLIAMAYFSIPLELLYFATCSDLFPLKW 85
>01_03_0147 - 13125065-13126679,13126802-13127664
Length = 825
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 268 TFLTPLDQRNLFKRVSTRMSGVPICFS 188
++LT L RNL + + R +G P C++
Sbjct: 481 SYLTDLISRNLIQALHLRHNGTPSCYT 507
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,648,875
Number of Sequences: 37544
Number of extensions: 171721
Number of successful extensions: 387
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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