Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_C01
(402 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 6e-12
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48) 58 4e-09
SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 3.3
SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_21275| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06) 27 7.6
SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4) 26 10.0
SB_50834| Best HMM Match : GCR (HMM E-Value=2.5) 26 10.0
>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 849
Score = 66.9 bits (156), Expect = 6e-12
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Frame = +3
Query: 114 LHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVR--NVPFRVRV 287
+H G F + K ++K +K+ + V TR K + NVP+RVRV
Sbjct: 750 IHNAARGCNFFLLLDFSFKMVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYRVRV 809
Query: 288 RLSRXRNDDEXSAHKLFTLVTYVPVASIKGLXTENVDA 401
RL+R RN+DE S HKL+TLVT V V++ KGL T+ V++
Sbjct: 810 RLARKRNEDEDSPHKLYTLVTSVAVSTFKGLQTQKVES 847
Score = 56.4 bits (130), Expect = 8e-09
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +3
Query: 39 MAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKR 152
M K ++KG+SAINEVVTREYT+NLHKR+HG+ R
Sbjct: 769 MVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYR 806
>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
Length = 776
Score = 57.6 bits (133), Expect = 4e-09
Identities = 27/42 (64%), Positives = 33/42 (78%)
Frame = +3
Query: 264 NVPFRVRVRLSRXRNDDEXSAHKLFTLVTYVPVASIKGLXTE 389
NVP+RVRVRL+R RN+DE S HKL+TLVT V V++ K L E
Sbjct: 2 NVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKVLADE 43
>SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 927
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 259 TPLDQRNLFKRVSTRMSGVPICFSANF 179
TP D N R T M G+P+C +A F
Sbjct: 285 TPEDTPNDSLRTKTVMFGIPVCMTARF 311
>SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 63 KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRK 182
K K INEV+T Y + L KR R IKE+ +
Sbjct: 213 KNKPEINEVITPRYPPGEGEVLDDASIIKRYKRQIKELEE 252
>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 161 SNQRNPKVR*KTDGNSGHSSRHSLKQIPLV*GSQKCSLPCPCEAFT 298
S ++ ++ D GH + ++Q PL K LPC FT
Sbjct: 349 SKKKKQGIQGSADAEQGHHEQSLVRQRPLFAPLPKLRLPCQYNPFT 394
>SB_21275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 26.6 bits (56), Expect = 7.6
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +3
Query: 27 LKITMAKPKGERKGKSAINEVVTREYTVNLHKRLHGV-GFKKRAPRAIKEIRKFAE--KQ 197
+ + + K K R+ NE + REY LHK L + F PR R + KQ
Sbjct: 91 IALVIEKDKSLRRKIEEENEQLKREYLQQLHKTLEALRTFDFNNPRDAIFKRNLVKMHKQ 150
Query: 198 MGTPDIRVDTRLN 236
+G +RV +N
Sbjct: 151 VGNYCLRVYGEMN 163
>SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)
Length = 438
Score = 26.6 bits (56), Expect = 7.6
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = -3
Query: 244 RNLFKRVSTRMSGVPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLP 65
RNL KRV R P C + R + + L R CK +V S +T+ +
Sbjct: 214 RNLAKRVHERFGDAPGCEFRHRRRNSGVGTSEILTDCSGERSCKRSVTSNRSTNSSSKER 273
Query: 64 FLSPLGLAI 38
++ PL I
Sbjct: 274 WMGPLASCI 282
>SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4)
Length = 235
Score = 26.2 bits (55), Expect = 10.0
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = -3
Query: 205 VPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAIVILS 26
VP C + +SL+AL PT C L S V S D+P S +GL++ LS
Sbjct: 46 VPTCSLID--LSLVALSVNLDVPT-----CSLFDLSLVALSMNLDVPTCSLIGLSLFALS 98
>SB_50834| Best HMM Match : GCR (HMM E-Value=2.5)
Length = 909
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 45 KPKGERKGKSAINEVVTREYTVNLHK 122
KPKG+ +G NEV +++ TV + K
Sbjct: 299 KPKGQPQGSRPSNEVQSKDSTVMISK 324
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,643,890
Number of Sequences: 59808
Number of extensions: 220911
Number of successful extensions: 414
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -