Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B24
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37759| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_30324| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_37759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -1

Query: 352 TCDVFIRIGRHIY-HVNYCHIS-LRTTTLAKDTLVTLTQHIRFVITNTFC*DRYKDRPLC 179
           T  + I   RH Y H++   I+ L TTTL   TLVT T  I  +IT T          L 
Sbjct: 75  TTTLVINYPRHHYPHISTLVITTLVTTTLVTTTLVTTTLDIITLITTTLDITTLATTTLA 134

Query: 178 ITSLI 164
            T+L+
Sbjct: 135 TTTLV 139



 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -1

Query: 292 SLRTTTLAKDTLVTLTQHIRFVITNTFC*DRYKDRPLCITSLI 164
           +L TTTLA  TLVT T  I  ++T T          L IT+L+
Sbjct: 127 TLATTTLATTTLVTTTLVITTLVTTTLVTTTLVITTLVITTLV 169


>SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 605 PDQAXARSRSASCCTACTTPNSPPLSERDSLPEHV 501
           P  + + S S+      + P+SPP S   SLPE+V
Sbjct: 158 PPSSSSPSSSSPSVPPSSPPSSPPSSSSSSLPEYV 192


>SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 332 PDKDIACAPFSLIPTEKAQNVCDNEISEK 418
           P +D  C P S++P ++  N CD ++ E+
Sbjct: 39  PPRD--CVPTSMVPGDRQDNDCDGKVDEE 65


>SB_30324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 294 YHCER-PH*QKIHSLHSHNI*DLLLRT 217
           Y C+R P  Q I+ LH HNI +L  RT
Sbjct: 50  YKCQRTPQCQSINYLHDHNICELNNRT 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,939,914
Number of Sequences: 59808
Number of extensions: 416765
Number of successful extensions: 1018
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)