Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B24
         (619 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    24   3.4  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    24   4.5  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    23   6.0  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 457 RSASHTVLRARKPLETCSGNESRSDSGGLFGVV 555
           R+A H +LRA +   + + N S S SG   G +
Sbjct: 324 RNAQHLLLRANRLTVSDNHNLSNSGSGNTAGTI 356


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 448  SRRRSASHTVLRARKPLETCSGNESRSDSGG 540
            SR RS S +  R+R      S + SRS SGG
Sbjct: 1095 SRSRSRSRSRSRSRSGSAKGSRSRSRSGSGG 1125


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 87  VVVESKHSAPFIHRLPYWIR 28
           +++      P  HR+P WIR
Sbjct: 315 IIINWNFRGPRTHRMPMWIR 334


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,090
Number of Sequences: 2352
Number of extensions: 14020
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60553008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)