Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B24
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.4  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   7.3  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   7.3  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 239 MLCECNECIFC 271
           M C CN+CI C
Sbjct: 83  MQCSCNKCIGC 93


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 176 HLVNRPAITRFLFXNIIRFSI 114
           +LVN P+IT +++  +  FS+
Sbjct: 63  NLVNEPSITCYMYCLLEAFSL 83


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 176 HLVNRPAITRFLFXNIIRFSI 114
           +LVN P+IT +++  +  FS+
Sbjct: 63  NLVNEPSITCYMYCLLEAFSL 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,330
Number of Sequences: 438
Number of extensions: 3400
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)