Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B24
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62830.1 68418.m07886 F-box family protein-related similar to...    28   4.3  
At2g45840.1 68415.m05701 expressed protein                             27   10.0 

>At5g62830.1 68418.m07886 F-box family protein-related similar to
           F-box protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; contains TIGRFAM TIGR01640 : F-box protein
           interaction domain
          Length = 204

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 425 CYFFH*SHCRIHFEPSRSGSVRTEHMRCLYQDRQT 321
           C  FH   CR+  +      VR EH+   YQ RQT
Sbjct: 68  CAHFHHQPCRV--DTIALSVVREEHLSLFYQSRQT 100


>At2g45840.1 68415.m05701 expressed protein
          Length = 523

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 437 TVSFPADDQLVTQYCEPENPWKHVPATNRAQIAADY 544
           T+    D  + TQ C   NP K  P+ +  +   DY
Sbjct: 87  TLQCSLDQNIATQTCPASNPEKSQPSKDEPETCPDY 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,315,863
Number of Sequences: 28952
Number of extensions: 263973
Number of successful extensions: 647
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)