Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_B23
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 274 7e-75
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 229 3e-61
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 154 1e-38
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 131 7e-32
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 113 3e-26
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 107 2e-24
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 105 6e-24
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 104 1e-23
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 103 3e-23
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 99 3e-22
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 99 3e-22
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 96 5e-21
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 94 2e-20
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 92 6e-20
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 91 1e-19
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 88 9e-19
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 86 4e-18
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 81 2e-16
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 80 3e-16
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 78 1e-15
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 71 1e-13
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 66 6e-12
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 58 1e-09
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 37 0.003
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 34 0.021
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 30 0.34
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 28 1.4
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 27 2.4
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 27 2.4
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 27 3.1
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 3.1
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 4.1
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 26 4.1
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 5.5
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 26 5.5
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 5.5
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 7.2
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 274 bits (672), Expect = 7e-75
Identities = 126/174 (72%), Positives = 155/174 (89%)
Frame = +3
Query: 129 MDPGTLDTDWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQ 308
++ ++T++D+V++TFDDMNLK LLRGIYAYGFE+PSAIQQRAIMP + RDV+AQAQ
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQ 64
Query: 309 SGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGG 488
SGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQI KVV+ALGD +N +CHACIGG
Sbjct: 65 SGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGG 124
Query: 489 TNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
T VR+D+ L++GVHVVVGTPGRV+DMI RRAL + +++FVLDEADEMLS GF
Sbjct: 125 TLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGF 178
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 229 bits (560), Expect = 3e-61
Identities = 112/175 (64%), Positives = 135/175 (77%), Gaps = 1/175 (0%)
Frame = +3
Query: 129 MDPGTLDTDWD-QVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQA 305
M+ L T D V +F++MNLK LLRGIYAYG+E PSA+Q RAI+ + RDVIAQA
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 306 QSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIG 485
QSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QI VV+ALGDH+N +CHACIG
Sbjct: 66 QSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIG 125
Query: 486 GTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
GT+V DI++L+ G HVV GTPGRV DMI RR L +K+ +LDEADE+L+ GF
Sbjct: 126 GTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGF 180
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 154 bits (373), Expect = 1e-38
Identities = 82/194 (42%), Positives = 115/194 (59%), Gaps = 4/194 (2%)
Frame = +3
Query: 81 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKXXLLRGIYAYGFEKPSA 248
+N D+ S+ G P + + V +T F+D LK LL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 249 IQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIX 428
IQ+ +I + RD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q
Sbjct: 70 IQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTS 129
Query: 429 KVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKL 608
+V LG H+N K GGT +R+DI +L VH+VVGTPGRV D+ + +
Sbjct: 130 QVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTT 189
Query: 609 FVLDEADEMLSXGF 650
FV+DEAD++LS F
Sbjct: 190 FVMDEADKLLSPEF 203
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 131 bits (317), Expect = 7e-32
Identities = 68/160 (42%), Positives = 107/160 (66%), Gaps = 3/160 (1%)
Frame = +3
Query: 168 VETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQX--RDVIAQAQSGTGKTATFSI 341
V++F+++ LK LL+GIY+ F+KPS IQ++A+ + R++I Q+QSGTGKTA F++
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 342 SILQQIDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDI-RQL 518
++L ++D S+ + QA+ LAP+RELA+QI VV +G + K +++ + +
Sbjct: 173 TMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT-----AFGIKDSVPKGA 227
Query: 519 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 638
+ +V+GTPG V D++ RR L A IK+FVLDEAD ML
Sbjct: 228 KIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNML 267
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 113 bits (271), Expect = 3e-26
Identities = 65/158 (41%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQ 356
F D LK LLR I GFE PS +QQ I I DV+ QA+SG GKTA F +S LQQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 357 IDTSIRECQALILAPTRELAQQIXKVVIALGDHL-NAKCHACIGGTNVREDI---RQLES 524
I+ E L+L TRELA QI +L + + GG N+++D+ +
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 525 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 638
H+VV TPGR+ ++ + L N++K FVLDE D++L
Sbjct: 173 SPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLL 210
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 107 bits (256), Expect = 2e-24
Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 2/160 (1%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQ 356
F M L LLR I+ GF+ P+ IQ++ I ++ RDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 357 IDTSIREC--QALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 530
+ +++ +ALIL+P RELA Q KVV + + A +GG ++ E L
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKP 190
Query: 531 HVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
+VV TPGR + L ++I+ V DEAD + GF
Sbjct: 191 DIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGF 230
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 105 bits (252), Expect = 6e-24
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Frame = +3
Query: 174 TFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQ 353
+F MNL +L+G+ GFE P+ IQ + I + +D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 354 QI---DTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLES 524
++ + + LIL PTRELA Q V + + CIGG +++ ++L
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 525 GVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLSXGF 650
+V+ TPGR D M + I++ V+DEAD ML GF
Sbjct: 380 RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGF 422
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 104 bits (250), Expect = 1e-23
Identities = 56/169 (33%), Positives = 92/169 (54%), Gaps = 1/169 (0%)
Frame = +3
Query: 147 DTDWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKT 326
D+ ++ +TF ++ + L GF+ P+ IQQ AI + RDVI AQ+G+GKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 327 ATFSISILQQIDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVRED 506
A F++ ++Q++ + A++LAPTRELA QI + A+G + + +GG ++
Sbjct: 98 AAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQ 157
Query: 507 IRQLESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSXGF 650
L HV+V TPGR+ D + + +K ++DEAD +L F
Sbjct: 158 AVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDF 206
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 103 bits (246), Expect = 3e-23
Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 8/174 (4%)
Frame = +3
Query: 153 DWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTAT 332
D + +++ L +L+ + +++PS+IQ+ AI +Q +D+I A++G+GKTA
Sbjct: 243 DLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAA 302
Query: 333 FSISILQQIDT--SIRECQ------ALILAPTRELAQQIXKVVIALGDHLNAKCHACIGG 488
F I ++ I + E A++LAPTRELAQQI + L +C + +GG
Sbjct: 303 FIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGG 362
Query: 489 TNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
E Q+ G H+VV TPGR+ D + RR + V+DEAD ML GF
Sbjct: 363 HAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGF 416
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 99 bits (238), Expect = 3e-22
Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 8/168 (4%)
Frame = +3
Query: 171 ETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISIL 350
+TF D NL L R I+ FEKP+++Q I ++ +D++AQA++G+GKTA + I IL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 351 Q------QIDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIR 512
+ QID + R AL+L PTRELAQQ+ V+ L + TN + ++
Sbjct: 74 ELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQ 133
Query: 513 Q--LESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
+ L +V+ TP R + L + +K V+DEAD MLS G+
Sbjct: 134 RPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGY 181
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 99 bits (238), Expect = 3e-22
Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 4/164 (2%)
Frame = +3
Query: 171 ETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISIL 350
++F D+ + L+ + A +P+ IQ+ I ++ R+ I A++G+GKTA F++ I+
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 351 QQIDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 530
++ ALIL PTRELA QI + ALG +LN K +GG ++ L
Sbjct: 67 EKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRP 126
Query: 531 HVVVGTPGRVYDMITRRALHA----NTIKLFVLDEADEMLSXGF 650
HVVV TPGR+ D+I IK V+DEAD +LS F
Sbjct: 127 HVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTF 170
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 95.9 bits (228), Expect = 5e-21
Identities = 58/166 (34%), Positives = 90/166 (54%), Gaps = 5/166 (3%)
Frame = +3
Query: 168 VETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATF---S 338
+E F D+ L + + I GFE + IQ+R+I P + RDV+ A++G+GKT F +
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 339 ISILQQIDTSIRE-CQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQ 515
I +L + R +I++PTRELA QI V L + + IGG N R + +
Sbjct: 148 IEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADK 207
Query: 516 LESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSXGF 650
L GV+++V TPGR+ D + + ++ V+DEAD +L GF
Sbjct: 208 LVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGF 253
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 93.9 bits (223), Expect = 2e-20
Identities = 59/161 (36%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Frame = +3
Query: 168 VETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISI 347
V + +L +L + GF KP IQ I D+I +A +G+GKT F I I
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI 180
Query: 348 LQQI--DTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLE 521
L+ + + QAL++APTRELA QI + + N + + GG V++ R L
Sbjct: 181 LEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLN 240
Query: 522 SGVHVVVGTPGRVYDMITRRALHAN--TIKLFVLDEADEML 638
HVVV TPGR++ +I L N IK VLDEAD +L
Sbjct: 241 KHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLL 281
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 92.3 bits (219), Expect = 6e-20
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 5/166 (3%)
Frame = +3
Query: 168 VETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISI 347
V TF++ +L+ + GFE P+ IQQ+A + RD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 348 LQQIDTSIRECQA-----LILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIR 512
+ I+ L+LAPTRELA QI + G + GG IR
Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIR 240
Query: 513 QLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
L GV + + TPGR+ DM+ + + VLDEAD ML GF
Sbjct: 241 DLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGF 286
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 91.5 bits (217), Expect = 1e-19
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
Frame = +3
Query: 153 DWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTAT 332
D + V ++ L + I + G+EKP++IQ +AI RDVI A++G+GKT
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 333 FSISILQQIDTS--IRECQ---ALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNV 497
F + + + I ++ + A+I+ PTRELA QI + LN + GG +
Sbjct: 472 FLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPI 531
Query: 498 REDIRQLESGVHVVVGTPGRVYDMITR---RALHANTIKLFVLDEADEMLSXGF 650
++ I L+ G +VV TPGR+ D+++ R + + VLDEAD M GF
Sbjct: 532 KDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGF 585
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 88.2 bits (209), Expect = 9e-19
Identities = 64/179 (35%), Positives = 87/179 (48%), Gaps = 18/179 (10%)
Frame = +3
Query: 168 VETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISI 347
V F L LL+ I G+ +P+ +Q+ +I RD++A AQ+G+GKTA F I
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227
Query: 348 L--------------QQIDTSIRECQA----LILAPTRELAQQIXKVVIALGDHLNAKCH 473
L Q R +A LILAPTREL QI + +
Sbjct: 228 LSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPC 287
Query: 474 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
A GG ++R IRQ++ G ++ TPGR+ D+I R + IK VLDEAD ML GF
Sbjct: 288 AVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGF 346
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 86.2 bits (204), Expect = 4e-18
Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQ 356
FD++++ L G+ Y ++P+ IQ + RDV+ A++G+GKT F I LQ
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 357 ID---TSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 527
++ + + L+++PTRELA Q + + +L N K GG E R ++
Sbjct: 227 LNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNA 286
Query: 528 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
V++GTPGR+ D+I ++ + + VLDEAD ML GF
Sbjct: 287 -SVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGF 326
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 80.6 bits (190), Expect = 2e-16
Identities = 48/168 (28%), Positives = 92/168 (54%), Gaps = 5/168 (2%)
Frame = +3
Query: 162 QVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSI 341
+ V+ F ++ L + F + IQ++ I ++ RD++ A++G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 342 SILQQID----TSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDI 509
+++ + TS+ AL+++PTRELA Q + ++ +G + IGG N +E+
Sbjct: 96 PLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEK 155
Query: 510 RQLESGVHVVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSXGF 650
+L S ++++V TPGR+ I + + +++ +LDEAD +L GF
Sbjct: 156 ERL-SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGF 202
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 79.8 bits (188), Expect = 3e-16
Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 13/172 (7%)
Frame = +3
Query: 174 TFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQ 353
+F +N+ L + A GF+K + +Q AI ++ +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 354 QI---DTSIRECQALILAPTRELAQQIXKVVIAL----------GDHLNAKCHACIGGTN 494
++ DT ALI+APTRELA QI V L G L A + GT
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTL 121
Query: 495 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
+ E VV+GTPGR+ +M++ + + +++ +LDEAD ++ GF
Sbjct: 122 TNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGF 171
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 77.8 bits (183), Expect = 1e-15
Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 14/151 (9%)
Frame = +3
Query: 240 PSAIQQRAIMPCIQX--RDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALI 392
P+AIQ + + +D +AQ+G+GKT + + I+Q++ T A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 393 LAPTRELAQQIXKVVIALGD----HLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRV 560
+APTREL QQI V L + H C+ IGG + + ++ GV++++GTPGR+
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGTPGRL 280
Query: 561 YDMI-TRRALHANTIKLFVLDEADEMLSXGF 650
D + AL + ++ VLDE D ++ GF
Sbjct: 281 ADHLENTEALDVSQVRWVVLDEGDRLMDMGF 311
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 71.3 bits (167), Expect = 1e-13
Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Frame = +3
Query: 228 GFEKPSAIQQRAIMPCIQXRD-VIAQAQSGTGKTATFSISILQQI-----DTSIRECQAL 389
GFEK + +QQR + + + QA++GTGKT F + + + + + ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 390 ILAPTRELAQQIXKVVIALGDHLNAKCHACIGG-TNVREDIRQLESGVHVVVGTPGRVYD 566
IL+PTRELA QI + L + IGG + +RE+ ++++ TPGR+ D
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
Query: 567 MITR-RALHANTIKLFVLDEADEMLSXGF 650
+ R L + + F+LDEAD ++ GF
Sbjct: 177 HLQNPRILESLSTDSFILDEADRLMDMGF 205
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 65.7 bits (153), Expect = 6e-12
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Frame = +3
Query: 243 SAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQ 419
+ IQ+ AI RD++A A +G+GKT + ILQ++ + +A+I+APTREL +
Sbjct: 70 TTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCE 129
Query: 420 QIXKVVIALGDHLNAK-CHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHAN 596
QI + L + K ++E +L + +GTP R+ I + L
Sbjct: 130 QIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAI-QTGLSFE 188
Query: 597 TIKLFVLDEADEMLSXGF 650
++ FV+DEAD + GF
Sbjct: 189 KVEFFVMDEADRLFEPGF 206
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 58.0 bits (134), Expect = 1e-09
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Frame = +3
Query: 288 DVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIXKVVIALGDHLNA 464
DV A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 175 DVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGL 234
Query: 465 KCHACIGGTNVREDIRQL-----ESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEA 626
+ A G ++R + QL E + V+V TPGR+ D I + ++ V+DEA
Sbjct: 235 QVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEA 294
Query: 627 DEMLSXGF 650
D +L F
Sbjct: 295 DRLLDQSF 302
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 36.7 bits (81), Expect = 0.003
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 9/154 (5%)
Frame = +3
Query: 192 LKXXLLRGIY-AYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQIDTS 368
L L+ +Y + EK Q AI VI + +GK+ + I ILQ +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 369 IRECQALILAPTRELAQQIXKVVIALGDHL----NAKCHACIGGTNVREDIRQLESGVHV 536
+ A + PT+ LAQ K +I + ++ N + G T + E + ++
Sbjct: 354 DNQSTAFFVFPTKSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPL-ESRESIIRSANI 412
Query: 537 VVGTPGRVYDMITRRA----LHANTIKLFVLDEA 626
+ P ++ I A +KLFVLDEA
Sbjct: 413 IFTNPDMLHQTILPNANRWYYFFKNLKLFVLDEA 446
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 33.9 bits (74), Expect = 0.021
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Frame = +3
Query: 288 DVIAQAQSGTGKTATFSISILQQIDTSIRE--------CQALILAPTRELAQQIXKVVIA 443
+++ A +G GKT + IL ++ +RE + + +AP + L Q++
Sbjct: 537 NILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSK 596
Query: 444 LGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA---LHANTIKLFV 614
N + G + + +Q S ++V TP + +D+ITR+A + N ++L +
Sbjct: 597 RLTPYNIRVAELTGDSQL---TKQQISETQIIVTTPEK-WDIITRKANDLSYVNLVRLVI 652
Query: 615 LDE 623
+DE
Sbjct: 653 IDE 655
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 29.9 bits (64), Expect = 0.34
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 468 CHACIGGTNVREDIRQLE-SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 635
C I G N R + +L S + ++ + + R + A+T K+ +LDEAD M
Sbjct: 76 CARKIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAM 132
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 144 LDTDWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRD 290
LDT+W V + NL+ + I + F PS I + MP + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 458 QVITKSYHHLXNLLGQLSCGSQDQ 387
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 27.1 bits (57), Expect = 2.4
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Frame = +3
Query: 357 IDTSIRECQALILAPTR-ELAQQIXKVVIALGDHLNAK-CHACIGGTNVREDIRQLESGV 530
+D IR+ A+ +P +LA + + D H +++ D+R +ESGV
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYIESGV 404
Query: 531 HVVVGTPGRVYDMITR--RALHANTIKLFVLDEADEMLSXGF 650
+ + T G YD + L+ + IK V E M G+
Sbjct: 405 NRFIATSG--YDGCVKLWNPLNCSLIKSMVGHEEKVMSVDGY 444
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 141 TLDTDWDQVVETFDDMNLKXXLLRGIYAYGF 233
T D WD E FDD N +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 118 DLREWTLGHLTPT 156
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 441 ALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT-PGRVYDMITRRALHANTIK 605
A+ DHL+ + CIG N+ ED VH + T G+ ++T H++ I+
Sbjct: 140 AISDHLDLLNNCCIGIANLNED------SVHKISLTRSGKPSQLVTVSCRHSSVIQ 189
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +3
Query: 390 ILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT 548
+LAP REL +++ + + + D+ ++C R + L +++++ T
Sbjct: 29 VLAPDRELKEELVQRNLFVDDNYLVVNYSCSSARMTRVTVNSLFENLYLIIDT 81
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -2
Query: 518 QLANIFTDIGAT---NASMAFSIQVITKSYHHLXNLL 417
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 344 DSTTNRYKHS*MSSFDPGSHKRAGPTNSXGGDSS 445
D+ TNR + SSFD S P+N+ G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 138 QGPFPEVHRNYLDPSMAHFWNPLANL 61
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +3
Query: 312 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQI 425
G G T F+ SILQQI + SI +C + +P R + ++I
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERI 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,617
Number of Sequences: 5004
Number of extensions: 58678
Number of successful extensions: 216
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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