Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_B23
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 241 3e-64
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 241 4e-64
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 236 8e-63
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 225 3e-59
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 201 4e-52
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 142 2e-34
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 142 2e-34
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 141 3e-34
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 141 3e-34
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 137 7e-33
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 116 2e-26
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 116 2e-26
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 114 6e-26
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 114 6e-26
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 109 2e-24
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 107 8e-24
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 105 3e-23
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 105 3e-23
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 103 8e-23
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 103 8e-23
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 103 1e-22
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 103 1e-22
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 102 2e-22
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 101 3e-22
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 101 3e-22
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 101 3e-22
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 100 1e-21
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 99 1e-21
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 99 1e-21
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 99 1e-21
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 99 2e-21
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 98 5e-21
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 98 5e-21
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 98 5e-21
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 96 2e-20
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 95 3e-20
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 91 4e-19
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 90 1e-18
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 89 2e-18
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 89 2e-18
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 88 4e-18
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 87 1e-17
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 87 1e-17
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 86 2e-17
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 86 2e-17
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 84 9e-17
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 83 2e-16
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 83 2e-16
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 83 2e-16
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 83 2e-16
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 82 4e-16
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 82 4e-16
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 81 5e-16
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 80 1e-15
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 78 6e-15
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 77 8e-15
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 77 1e-14
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 72 4e-13
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 72 4e-13
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 66 1e-11
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 61 7e-10
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 57 1e-08
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 56 2e-08
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 42 5e-04
At2g28600.1 68415.m03476 expressed protein 34 0.072
At2g04620.1 68415.m00470 cation efflux family protein potential ... 33 0.22
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ... 30 1.2
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 30 1.2
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 2.7
At4g17920.1 68417.m02670 zinc finger (C3HC4-type RING finger) fa... 29 3.6
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu... 28 4.7
At3g10020.1 68416.m01202 expressed protein 28 4.7
At1g76010.1 68414.m08825 expressed protein 28 4.7
At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transfera... 28 6.2
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 28 6.2
At2g43110.1 68415.m05352 expressed protein 28 6.2
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 241 bits (590), Expect = 3e-64
Identities = 116/167 (69%), Positives = 138/167 (82%)
Frame = +3
Query: 150 TDWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTA 329
T +D V E+FD M L+ LLRGIYAYGFEKPSAIQQR I+P + DVI QAQSGTGKTA
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 330 TFSISILQQIDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDI 509
TF +LQQ+D S+ +CQAL+LAPTRELAQQI KV+ ALGD+L K HAC+GGT+VRED
Sbjct: 92 TFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 151
Query: 510 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
R L++GVHVVVGTPGRV+DM+ R++L A+ IK+FVLDEADEMLS GF
Sbjct: 152 RILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGF 198
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 241 bits (589), Expect = 4e-64
Identities = 115/170 (67%), Positives = 140/170 (82%)
Frame = +3
Query: 141 TLDTDWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTG 320
T T++D+V ++FD M L+ LLRGIYAYGFEKPSAIQQR I+P + DVI QAQSGTG
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTG 90
Query: 321 KTATFSISILQQIDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVR 500
KTATF +LQQ+D S+ +CQAL+LAPTRELAQQI KV+ ALGD+L K AC+GGT+VR
Sbjct: 91 KTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVR 150
Query: 501 EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
ED R L+SGVHVVVGTPGRV+D++ R++L A+ IK+FVLDEADEMLS GF
Sbjct: 151 EDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGF 200
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 236 bits (578), Expect = 8e-63
Identities = 113/167 (67%), Positives = 137/167 (82%)
Frame = +3
Query: 150 TDWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTA 329
T +D+V E+FD M L+ LLRGIYAYGFEKPSAIQQR I+P + DVI QAQSGTGKTA
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 330 TFSISILQQIDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDI 509
TF +LQQ+D ++ +CQAL+LAPTRELAQQI KV+ ALGD+ K HAC+GGT+VRED
Sbjct: 92 TFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQ 151
Query: 510 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
R L++GVHVVVGTPGRV+DM+ R++L + IK+FVLDEADEMLS GF
Sbjct: 152 RILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGF 198
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 225 bits (549), Expect = 3e-59
Identities = 107/167 (64%), Positives = 130/167 (77%)
Frame = +3
Query: 150 TDWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTA 329
TD + + +F+DM +K +LRG+Y YGFEKPSAIQQRA+MP +Q RDVIAQAQSGTGKT+
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTS 87
Query: 330 TFSISILQQIDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDI 509
++S+ Q +DTS RE QALIL+PTRELA Q K + A+G H N + HACIGG +V EDI
Sbjct: 88 MIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDI 147
Query: 510 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
R+LE GVHVV GTPGRV DMI RR+L IKL +LDE+DEMLS GF
Sbjct: 148 RKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGF 194
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 201 bits (490), Expect = 4e-52
Identities = 91/160 (56%), Positives = 122/160 (76%)
Frame = +3
Query: 168 VETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISI 347
+++FDDM + +LRG+Y YG++KPS IQQRA++P ++ RDVIAQAQSGTGKT+ +IS+
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80
Query: 348 LQQIDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 527
Q ++ S R+ Q L+L+P+RELA Q K + A+G H N + HACIGG ++ EDI++LE G
Sbjct: 81 CQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERG 140
Query: 528 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXG 647
VH V GTPGRVYDMI R +L +KL VLDE+DEMLS G
Sbjct: 141 VHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKG 180
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 142 bits (343), Expect = 2e-34
Identities = 70/158 (44%), Positives = 101/158 (63%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQ 356
F+D LK LL GIY GFE+PS IQ+ +I + RD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 357 IDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 536
ID QA+I+ PTRELA Q +V LG HL + GGT++++DI +L VH+
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHL 252
Query: 537 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
+VGTPGR+ D+ + + V+DEAD++LS F
Sbjct: 253 LVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEF 290
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 142 bits (343), Expect = 2e-34
Identities = 70/158 (44%), Positives = 101/158 (63%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQ 356
F+D LK LL GIY GFE+PS IQ+ +I + RD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 357 IDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 536
ID QA+I+ PTRELA Q +V LG HL + GGT++++DI +L VH+
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHL 252
Query: 537 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
+VGTPGR+ D+ + + V+DEAD++LS F
Sbjct: 253 LVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEF 290
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 141 bits (342), Expect = 3e-34
Identities = 70/158 (44%), Positives = 101/158 (63%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQ 356
F+D LK LL+GIY GFEKPS IQ+ +I + D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 357 IDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 536
ID + QA+IL PTRELA Q +V L +LN + GGT++R+DI +L VH+
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
Query: 537 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
+VGTPGR+ D+ + + V+DEAD++LS F
Sbjct: 246 LVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEF 283
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 141 bits (342), Expect = 3e-34
Identities = 70/158 (44%), Positives = 101/158 (63%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQ 356
F+D LK LL+GIY GFEKPS IQ+ +I + D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 357 IDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 536
ID + QA+IL PTRELA Q +V L +LN + GGT++R+DI +L VH+
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
Query: 537 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
+VGTPGR+ D+ + + V+DEAD++LS F
Sbjct: 246 LVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEF 283
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 137 bits (331), Expect = 7e-33
Identities = 70/158 (44%), Positives = 98/158 (62%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQ 356
F+D LK LLRGIY GFEKPS IQ+ +I + D++A+A++GTGKT F I L++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 357 IDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 536
ID QA+IL PTRELA Q +V L +L + GGT++R+DI +L VH+
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHL 275
Query: 537 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
+VGTPGR+ D+ + + V+DEAD++LS F
Sbjct: 276 LVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEF 313
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 116 bits (278), Expect = 2e-26
Identities = 68/157 (43%), Positives = 89/157 (56%), Gaps = 3/157 (1%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQ 356
F D LK LLR I GFE PS +Q I I DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 357 IDTSIRECQALILAPTRELAQQIXKVVIALGDHL-NAKCHACIGGTNVR--EDIRQLESG 527
I+ S + AL+L TRELA QI + +L + K GG N++ +D+ + E
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC- 166
Query: 528 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 638
H+VVGTPGRV + + L ++ F+LDE D+ML
Sbjct: 167 PHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 203
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 116 bits (278), Expect = 2e-26
Identities = 68/157 (43%), Positives = 89/157 (56%), Gaps = 3/157 (1%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQ 356
F D LK LLR I GFE PS +Q I I DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 357 IDTSIRECQALILAPTRELAQQIXKVVIALGDHL-NAKCHACIGGTNVR--EDIRQLESG 527
I+ S + AL+L TRELA QI + +L + K GG N++ +D+ + E
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC- 166
Query: 528 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 638
H+VVGTPGRV + + L ++ F+LDE D+ML
Sbjct: 167 PHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 203
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 114 bits (274), Expect = 6e-26
Identities = 63/162 (38%), Positives = 96/162 (59%), Gaps = 6/162 (3%)
Frame = +3
Query: 183 DMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQI- 359
++ + +++ + + G EK IQ+ + P ++ RD+I +A++GTGKT F I I+ +I
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 360 -----DTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLES 524
R L+LAPTRELA+Q+ K L+ C GGT + + +RQL+
Sbjct: 168 KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQLDY 225
Query: 525 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
GV V VGTPGRV D++ R AL+ + ++ VLDEAD+ML GF
Sbjct: 226 GVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGF 267
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 114 bits (274), Expect = 6e-26
Identities = 61/162 (37%), Positives = 95/162 (58%), Gaps = 6/162 (3%)
Frame = +3
Query: 183 DMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQI- 359
D+ + +++ + G EK IQ+ + P ++ RD+I +A++GTGKT F I I+ +I
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 360 -----DTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLES 524
+ Q L+LAPTRELA+Q+ K L+ C GGT + + +R+L
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRELNY 237
Query: 525 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
G+ V VGTPGR+ D++ R AL+ + ++ VLDEAD+ML GF
Sbjct: 238 GIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGF 279
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 109 bits (261), Expect = 2e-24
Identities = 60/169 (35%), Positives = 95/169 (56%), Gaps = 8/169 (4%)
Frame = +3
Query: 168 VETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISI 347
+ ++++ L LL+ + G++KPS IQ AI +Q RDVI A++G+GKTA F + +
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371
Query: 348 LQQID-----TSIRECQ---ALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVRE 503
L I + E + A+++APTRELAQQI + + +L + + +GG ++ E
Sbjct: 372 LAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEE 431
Query: 504 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
++ G +V+ TPGR+ D + RR N VLDEAD M+ GF
Sbjct: 432 QGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGF 480
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 107 bits (256), Expect = 8e-24
Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 4/164 (2%)
Frame = +3
Query: 171 ETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISIL 350
+TF ++NL LLR G++KP+ IQ I + RD+ A A +G+GKTA F++ L
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTL 226
Query: 351 QQI---DTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLE 521
+++ + + LIL PTRELA QI ++ L + KC +GG +VRE L
Sbjct: 227 ERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLR 286
Query: 522 SGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSXGF 650
S +VV TPGR+ D + ++ + + + +LDEAD +L GF
Sbjct: 287 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGF 330
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 105 bits (251), Expect = 3e-23
Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 8/169 (4%)
Frame = +3
Query: 168 VETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISI 347
V TF L LL + G++ P+ IQ +AI + + ++A A +G+GKTA+F + I
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 348 LQQIDT--------SIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVRE 503
+ + T R A++LAPTREL Q+ LG L K +GG +
Sbjct: 169 ISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSG 228
Query: 504 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
+ +++ GV +++GTPGRV D++++ + + I FVLDE D ML GF
Sbjct: 229 QLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGF 277
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 105 bits (251), Expect = 3e-23
Identities = 65/182 (35%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Frame = +3
Query: 144 LDTDWDQV---VETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSG 314
++T D V V TF +++L L I + KP+ +Q+ AI ++ RD++A AQ+G
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 315 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIXKVVIALGDHLNA 464
+GKTA F I+ I D ++ + A+IL+PTRELA QI
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV 266
Query: 465 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSX 644
K GGT + + +R+LE GV ++V TPGR+ D++ R + I+ LDEAD ML
Sbjct: 267 KVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 326
Query: 645 GF 650
GF
Sbjct: 327 GF 328
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 103 bits (248), Expect = 8e-23
Identities = 60/177 (33%), Positives = 99/177 (55%), Gaps = 13/177 (7%)
Frame = +3
Query: 159 DQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFS 338
++VV+TF ++ ++ L++ G++ PS IQ A+ ++ +DVI AQ+G+GKT F+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFA 64
Query: 339 ISILQQIDTSIRECQ------------ALILAPTRELAQQIXKVVIALGDHLNAKCHACI 482
I ILQ + + + + A +L+PTRELA QI + ALG ++ +C +
Sbjct: 65 IPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLV 124
Query: 483 GGTNVREDIRQLESGVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLSXGF 650
GG + + L HV+V TPGR++D M + ++K VLDEAD +L+ F
Sbjct: 125 GGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDF 181
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 103 bits (248), Expect = 8e-23
Identities = 59/144 (40%), Positives = 87/144 (60%), Gaps = 10/144 (6%)
Frame = +3
Query: 249 IQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILA 398
IQ+ ++P +Q RD+IA+A++GTGKT F I I++++ T+ R + L+LA
Sbjct: 128 IQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLA 187
Query: 399 PTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITR 578
PTRELA+Q+ K + +L+ C GG + L GV VVVGTPGR+ D+I
Sbjct: 188 PTRELAKQVEKEIKESAPYLSTVC--VYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEG 245
Query: 579 RALHANTIKLFVLDEADEMLSXGF 650
R+L ++ VLDEAD+ML+ GF
Sbjct: 246 RSLKLGEVEYLVLDEADQMLAVGF 269
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 103 bits (247), Expect = 1e-22
Identities = 59/163 (36%), Positives = 85/163 (52%), Gaps = 4/163 (2%)
Frame = +3
Query: 174 TFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSIS--- 344
TF+ L +LR + + GF P+ IQ + +Q RD++A A++G+GKT + I
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
Query: 345 ILQQIDTSIRECQA-LILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLE 521
+L+ R LILAPTRELA QI + G C GG +++LE
Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELE 555
Query: 522 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
G +VV TPGR+ D++ + + + L VLDEAD ML GF
Sbjct: 556 RGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGF 598
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 103 bits (247), Expect = 1e-22
Identities = 60/171 (35%), Positives = 90/171 (52%), Gaps = 5/171 (2%)
Frame = +3
Query: 153 DWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTAT 332
D + V+TF+D ++ I +EKP+AIQ +A+ + RDVI A++G+GKTA
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAA 281
Query: 333 FSISILQQI--DTSIRECQA---LILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNV 497
F + ++ I ++ + +I APTRELA QI + A GG +
Sbjct: 282 FVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSK 341
Query: 498 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
E ++L++G +VV TPGR+ DM+ +AL VLDEAD M GF
Sbjct: 342 HEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGF 392
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 102 bits (244), Expect = 2e-22
Identities = 67/182 (36%), Positives = 94/182 (51%), Gaps = 13/182 (7%)
Frame = +3
Query: 144 LDTDWDQV---VETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSG 314
++T D V V TF +++L L I + KP+ +Q+ AI RD++A AQ+G
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 315 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIXKVVIALGDHLNA 464
+GKTA F I+ I D I + A+IL+PTRELA QI
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGV 253
Query: 465 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSX 644
K GGT V + IR+LE GV ++V TPGR+ D++ R + ++ LDEAD ML
Sbjct: 254 KVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDM 313
Query: 645 GF 650
GF
Sbjct: 314 GF 315
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 101 bits (243), Expect = 3e-22
Identities = 60/163 (36%), Positives = 85/163 (52%), Gaps = 4/163 (2%)
Frame = +3
Query: 174 TFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSIS--- 344
+F+ LLR + + GF P+ IQ ++ +Q RD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 345 ILQQIDTSIRECQA-LILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLE 521
LQ+I R L+L+PTRELA QI + + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 522 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
G +VV TPGR+ D++ R + I VLDEAD ML GF
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGF 321
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 101 bits (243), Expect = 3e-22
Identities = 60/163 (36%), Positives = 85/163 (52%), Gaps = 4/163 (2%)
Frame = +3
Query: 174 TFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSIS--- 344
+F+ LLR + + GF P+ IQ ++ +Q RD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 345 ILQQIDTSIRECQA-LILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLE 521
LQ+I R L+L+PTRELA QI + + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 522 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
G +VV TPGR+ D++ R + I VLDEAD ML GF
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGF 321
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 101 bits (243), Expect = 3e-22
Identities = 60/163 (36%), Positives = 85/163 (52%), Gaps = 4/163 (2%)
Frame = +3
Query: 174 TFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSIS--- 344
+F+ LLR + + GF P+ IQ ++ +Q RD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 345 ILQQIDTSIRECQA-LILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLE 521
LQ+I R L+L+PTRELA QI + + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 522 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
G +VV TPGR+ D++ R + I VLDEAD ML GF
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGF 321
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 100 bits (239), Expect = 1e-21
Identities = 59/161 (36%), Positives = 89/161 (55%), Gaps = 6/161 (3%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYA-YGFEKPSAIQQRAIMPCIQX---RDVIAQAQSGTGKTATFSIS 344
F+D+NL L++G+Y FEKPS IQ ++ P I + +IAQA +G+GKT F +
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAISL-PMIMTPPHKHLIAQAHNGSGKTTCFVLG 151
Query: 345 ILQQIDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGT--NVREDIRQL 518
+L ++D ++RE QAL + PTRELA Q +V+ +G + + R
Sbjct: 152 MLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGA 211
Query: 519 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 641
HVV+GTPG + + + L N +K+ V DEAD ML+
Sbjct: 212 PVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLA 252
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 99 bits (238), Expect = 1e-21
Identities = 56/151 (37%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Frame = +3
Query: 210 RGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSIS---ILQQIDTSIREC 380
R +Y+ GF PS IQ ++ +Q RD++A A++G+GKT + I LQ+I R
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG 301
Query: 381 QA-LILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 557
L+L+PTRELA QI + G C GG ++++E GV +VV TPGR
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGR 361
Query: 558 VYDMITRRALHANTIKLFVLDEADEMLSXGF 650
+ D++ + + + + VLDEAD ML GF
Sbjct: 362 LNDILEMKRISLHQVSYLVLDEADRMLDMGF 392
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 99 bits (238), Expect = 1e-21
Identities = 61/171 (35%), Positives = 89/171 (52%), Gaps = 10/171 (5%)
Frame = +3
Query: 168 VETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISI 347
V TF D++L L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 348 LQQI--DTSIRECQ--------ALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNV 497
+ I D + + A+IL+PTRELA QI K GGT +
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 498 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
+ +R+LE G ++V TPGR+ D++ R + I+ LDEAD ML GF
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGF 320
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 99 bits (238), Expect = 1e-21
Identities = 61/171 (35%), Positives = 89/171 (52%), Gaps = 10/171 (5%)
Frame = +3
Query: 168 VETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISI 347
V TF D++L L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 348 LQQI--DTSIRECQ--------ALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNV 497
+ I D + + A+IL+PTRELA QI K GGT +
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 498 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
+ +R+LE G ++V TPGR+ D++ R + I+ LDEAD ML GF
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGF 320
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 99.1 bits (236), Expect = 2e-21
Identities = 50/161 (31%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQ 356
F+ +NL + I G++ P+ IQ++ + + DV+A A++G+GKTA F I +L++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 357 IDTSIRE--CQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 530
+ + + +ALIL+PTR+LA+Q K LG + + +GG ++ + +L G
Sbjct: 90 LKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGP 149
Query: 531 HVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSXGF 650
V++ TPGR+ +++ + T++ V DEAD + GF
Sbjct: 150 DVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGF 190
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 97.9 bits (233), Expect = 5e-21
Identities = 59/171 (34%), Positives = 84/171 (49%), Gaps = 5/171 (2%)
Frame = +3
Query: 153 DWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTAT 332
D + ++ F D N +L I GF +P+ IQ + ++ RD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 333 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNV 497
+ + L + R Q LILAPTRELA QI + G + GG
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
Query: 498 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
IR L GV +V+ TPGR+ DM+ + + + VLDEAD ML GF
Sbjct: 279 GPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGF 329
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 97.9 bits (233), Expect = 5e-21
Identities = 59/171 (34%), Positives = 84/171 (49%), Gaps = 5/171 (2%)
Frame = +3
Query: 153 DWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTAT 332
D + ++ F D N +L I GF +P+ IQ + ++ RD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 333 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNV 497
+ + L + R Q LILAPTRELA QI + G + GG
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
Query: 498 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
IR L GV +V+ TPGR+ DM+ + + + VLDEAD ML GF
Sbjct: 279 GPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGF 329
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 97.9 bits (233), Expect = 5e-21
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 4/162 (2%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQ 356
F+ + L + G KP+ +Q + + RDV+ AQ+G+GKTA F++ IL +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 357 IDTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 536
+ AL++ PTRELA Q+ + ALG LN +C +GG ++ L S H+
Sbjct: 120 LAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHI 179
Query: 537 VVGTPGRVYDMITRR----ALHANTIKLFVLDEADEMLSXGF 650
V+ TPGR+ ++ + + T K VLDEAD +L GF
Sbjct: 180 VITTPGRIKVLLENNPDVPPVFSRT-KFLVLDEADRVLDVGF 220
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 95.9 bits (228), Expect = 2e-20
Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
Frame = +3
Query: 153 DWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTAT 332
D + V++F D+ +L + GF +P+ IQ + ++ RD+I A++G+GKT +
Sbjct: 93 DIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLS 152
Query: 333 FSISILQQIDTSIRECQA-----LILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNV 497
+ + + ++ L+LAPTRELA QI + G K GG
Sbjct: 153 YLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPK 212
Query: 498 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
+R L+ GV +V+ TPGR+ DM+ + + VLDEAD ML GF
Sbjct: 213 GPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGF 263
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 95.5 bits (227), Expect = 3e-20
Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 9/170 (5%)
Frame = +3
Query: 168 VETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISI 347
++TF + NL +L FEKPS IQ + RD+I A++G+GKT F I
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPA 172
Query: 348 LQQIDTSIREC---------QALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVR 500
+ + ++ L+L+PTRELA QI V+ G+ K GG++
Sbjct: 173 IMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKG 232
Query: 501 EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
I + SGV +V+GTPGR+ D+I L + + VLDEAD ML GF
Sbjct: 233 PQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGF 282
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 91.5 bits (217), Expect = 4e-19
Identities = 52/120 (43%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Frame = +3
Query: 288 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIXKVVIALGDHL-NA 464
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 465 KCHACIGGTNVR--EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 638
K GG N++ +D+ + E H+VVGTPGRV + + L ++ F+LDE D+ML
Sbjct: 62 KVSVFYGGVNIKIHKDLLKNEC-PHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 120
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 89.8 bits (213), Expect = 1e-18
Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 14/175 (8%)
Frame = +3
Query: 168 VETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISI 347
++ F DM LLR + G P+ IQ + + + RD+I A +G+GKT F + +
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 348 L-----QQIDTSIRECQ---ALILAPTRELAQQIXKVV------IALGDHLNAKCHACIG 485
+ ++I I + AL++ P+RELA+Q VV + + + CIG
Sbjct: 156 IILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIG 215
Query: 486 GTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
G ++R + ++ GVH+VV TPGR+ D++ ++ + + +L LDEAD ++ GF
Sbjct: 216 GVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGF 270
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 89.4 bits (212), Expect = 2e-18
Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 8/139 (5%)
Frame = +3
Query: 258 RAIMPCIQXRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTREL 413
+AI + + ++A A +G+GKTA+F + I+ + T R A++LAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 414 AQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHA 593
Q+ LG L K +GG + + +++ GV +++GTPGRV D++++ +
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIEL 121
Query: 594 NTIKLFVLDEADEMLSXGF 650
+ I FVLDE D ML GF
Sbjct: 122 DNIMTFVLDEVDCMLQRGF 140
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 89.0 bits (211), Expect = 2e-18
Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Frame = +3
Query: 174 TFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATF---SIS 344
TFD ++L I GF+ + IQ +I P ++ +DV+ A++G+GKT F ++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Query: 345 ILQQIDTSIRE-CQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLE 521
+L + S R +++ PTRELA Q V L H + IGG N R + +++
Sbjct: 150 LLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIA 209
Query: 522 SGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSXGF 650
SG ++V+ TPGR+ D + +A +K V+DEAD +L F
Sbjct: 210 SGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENF 253
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 88.2 bits (209), Expect = 4e-18
Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 8/174 (4%)
Frame = +3
Query: 153 DWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTAT 332
D + ++ + L +L + +EKP IQ +A+ + RD I A++G+GKT
Sbjct: 523 DVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLG 582
Query: 333 FSISILQQI-DTSIRECQ----ALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNV 497
F + +L+ I D E L++APTREL QQI + L +C GG+ V
Sbjct: 583 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGV 642
Query: 498 REDIRQLESGVHVVVGTPGRVYDMI---TRRALHANTIKLFVLDEADEMLSXGF 650
+ I +L+ G +VV TPGR+ D++ + + + + V+DEAD M GF
Sbjct: 643 AQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGF 696
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 86.6 bits (205), Expect = 1e-17
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 9/172 (5%)
Frame = +3
Query: 162 QVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSI 341
++VE F ++ L ++ + E P+ IQ I ++ + V+ + +G+GKT + +
Sbjct: 109 KLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLL 168
Query: 342 SILQQI---------DTSIRECQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTN 494
I+Q + T R + ++L PTREL++Q+ +V ++ H + GG+
Sbjct: 169 PIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSR 228
Query: 495 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
+R L + + +VVGTPGR+ I + I VLDEAD M GF
Sbjct: 229 IRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGF 280
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 86.6 bits (205), Expect = 1e-17
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 8/174 (4%)
Frame = +3
Query: 153 DWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTAT 332
D + ++ + L +L + +EKP IQ +A+ + RD I A++G+GKT
Sbjct: 390 DVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLG 449
Query: 333 FSISILQQI-DTSIRECQ----ALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNV 497
F + +L+ I D E L++APTREL QQI + L C GG+ V
Sbjct: 450 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGV 509
Query: 498 REDIRQLESGVHVVVGTPGRVYDMI---TRRALHANTIKLFVLDEADEMLSXGF 650
+ I +L+ G +VV TPGR+ D++ + + + + V+DEAD M GF
Sbjct: 510 AQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGF 563
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 85.8 bits (203), Expect = 2e-17
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 14/175 (8%)
Frame = +3
Query: 168 VETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATF---- 335
++ F DM +L + G +P+ IQ + + + RD+I A +G+GKT F
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 336 -SISILQQIDTSIRECQA---LILAPTRELAQQIXKVV------IALGDHLNAKCHACIG 485
I++ +++ I + LI+ P+RELA+Q +VV + + + CIG
Sbjct: 205 IMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIG 264
Query: 486 GTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
G ++R + ++ GVH+VV TPGR+ DM+ ++ + + + LDEAD ++ GF
Sbjct: 265 GIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGF 319
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 85.8 bits (203), Expect = 2e-17
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 15/175 (8%)
Frame = +3
Query: 171 ETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISIL 350
++F+++ L LL + GF P+ +Q A+ I+ D + Q+ +G+GKT + + IL
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
Query: 351 QQI-------------DTSIRECQALILAPTRELAQQIXKVVIAL-GDHLNAKCHACIGG 488
+I + E QA+I+AP+REL QI + V L G +GG
Sbjct: 170 SEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGG 229
Query: 489 TN-VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGF 650
N +R++ ++ +VVGTPGR+ ++ LH + + VLDE DE+LS F
Sbjct: 230 ANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNF 284
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 83.8 bits (198), Expect = 9e-17
Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 13/171 (7%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQ 356
FD L L+GI GF+ + +Q+ + +Q +D++A+A++GTGKT F + ++
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 357 I--------DTSIRECQALILAPTRELA-QQIXKVVIALGDHLNAKCHACIGGTNVREDI 509
+ D L++ PTRELA Q + I L H + IGGT + +
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 201
Query: 510 RQLE-SGVHVVVGTPGRVYDMITRRALHANT---IKLFVLDEADEMLSXGF 650
R+L+ S ++V TPGR+ D I + A +K+ VLDEAD +L GF
Sbjct: 202 RRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGF 252
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 83.0 bits (196), Expect = 2e-16
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 5/165 (3%)
Frame = +3
Query: 171 ETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATF---SI 341
+TF+ ++L + I GF + + IQ +AI P + DV+ A++G+GKT F ++
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Query: 342 SILQQIDTSIRE-CQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQL 518
+L ++ + R L++ PTRELA Q V L + + IGG + + L
Sbjct: 214 ELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEIL 273
Query: 519 ESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSXGF 650
GV+++V TPGR+ D + +K V+DEAD +L F
Sbjct: 274 AKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNF 318
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 83.0 bits (196), Expect = 2e-16
Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 14/172 (8%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSI----S 344
FD+ + L+ + A G K + +Q + C+ +D + +A++GTGK+ F + +
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 345 ILQQIDT-----SIRECQALILAPTRELAQQIXKVVIA-LGDHLNAKCHACIGGTNVRED 506
+L+ +++ + LIL PTRELA QI A L +H IGGT R D
Sbjct: 437 VLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLD 496
Query: 507 IRQLES-GVHVVVGTPGRVYDMITRRA---LHANTIKLFVLDEADEMLSXGF 650
++LES +++ TPGR+ D I ++ +KLF++DEAD +L GF
Sbjct: 497 QQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGF 548
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 82.6 bits (195), Expect = 2e-16
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 10/211 (4%)
Frame = +3
Query: 48 ERRSXDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKXXLLRGIYAY 227
+R++ + ++ K+ S ++ + ++ D V F + L + A
Sbjct: 58 KRKASEEEDEVKSDSSSEKKKSSKKVKLGVEDVEVDNPNAVSKF---RISAPLREKLKAN 114
Query: 228 GFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQIDTSI----------RE 377
G E IQ + D++ +A++G GKT F + IL+ + R
Sbjct: 115 GIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRS 174
Query: 378 CQALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 557
L+L PTRELA+Q+ A G L GG + +L+ GV +VVGTPGR
Sbjct: 175 PSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGR 234
Query: 558 VYDMITRRALHANTIKLFVLDEADEMLSXGF 650
+ D I R+ L + ++ VLDEADEML GF
Sbjct: 235 IKDHIERQNLDFSYLQFRVLDEADEMLRMGF 265
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 82.6 bits (195), Expect = 2e-16
Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 9/162 (5%)
Frame = +3
Query: 192 LKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQIDTS- 368
L ++ + GFE + +Q I +DV+ A +G+GKT F + ++ I S
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 369 -----IRECQALILAPTRELAQQIXKVVIALGDHL-NAKCHACIGGTNVREDIRQL-ESG 527
+ +I++PTREL+ QI KV L N +GG V D+ L E G
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 528 VHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSXGF 650
++++GTPGR+ DM+ R L +++ +LDEAD +L GF
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGF 184
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 81.8 bits (193), Expect = 4e-16
Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 24/204 (11%)
Frame = +3
Query: 108 SYDGPPGMDPGTLDTDWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAI-MPCIQX 284
S DG ++ + + + M L L++ IY F++P+ IQ+ + Q
Sbjct: 169 SCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQG 228
Query: 285 RDVIAQAQSGTGKTATFSISILQQI-DTSIR----------ECQ---------ALILAPT 404
+DVI A++G+GKT F + ILQ++ D + E Q ALI+ PT
Sbjct: 229 KDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPT 288
Query: 405 RELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMIT--- 575
RELA Q+ + + +L+ K +GG + R+L+ +VV TPGR++++++
Sbjct: 289 RELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGE 348
Query: 576 RRALHANTIKLFVLDEADEMLSXG 647
+ + +++ FVLDEAD M+ G
Sbjct: 349 KHLVELHSLSFFVLDEADRMVERG 372
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 81.8 bits (193), Expect = 4e-16
Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 16/174 (9%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSI----S 344
FD+ + L+ + A G K + +Q + C+ +D + +A++GTGK+ F + +
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 345 ILQQIDT-----SIRECQALILAPTRELAQQI---XKVVIALGDHLNAKCHACIGGTNVR 500
+L+ +++ + ALIL PTRELA QI K ++ D + + IGGT +
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQ--TLIGGTRFK 447
Query: 501 EDIRQLES-GVHVVVGTPGRVYDMITRRA---LHANTIKLFVLDEADEMLSXGF 650
D ++LES +++ TPGR+ D I ++ +KLF++DEAD +L GF
Sbjct: 448 LDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGF 501
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 81.4 bits (192), Expect = 5e-16
Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Frame = +3
Query: 114 DGPPGMDPGTLDTDWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDV 293
D P G T D+ + FD L L+ I GFE + +Q+ + +Q +DV
Sbjct: 365 DKPTGEHVKTSDSYLSKT--RFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDV 422
Query: 294 IAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ-IXKVVIAL 446
+A+A++GTGKT F + ++ + D+ L++ PTRELA Q + L
Sbjct: 423 LAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLL 482
Query: 447 GDHLNAKCHACIGGTNVREDIRQLESG-VHVVVGTPGRVYDMITRRALHANT---IKLFV 614
H + IGGT + + R++++ ++V TPGR+ D I + A +K+ V
Sbjct: 483 KYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLV 542
Query: 615 LDEADEMLSXGF 650
LDEAD +L GF
Sbjct: 543 LDEADHLLDMGF 554
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 79.8 bits (188), Expect = 1e-15
Identities = 52/176 (29%), Positives = 97/176 (55%), Gaps = 12/176 (6%)
Frame = +3
Query: 159 DQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFS 338
++ ++F+++ L L+R + G EKP+ IQQ AI ++ +DV+A+A++G+GKT +
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYL 101
Query: 339 ISILQQI---DTSIRE---CQALILAPTRELAQQIXKVVIALGDHLNAKCHAC-IGGTNV 497
+ +LQ++ D+ ++ A IL P+REL QQ+ V +L + + A + +
Sbjct: 102 LPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMS 161
Query: 498 REDIRQLESGV-HVVVGTPGRVYDMITRRALH----ANTIKLFVLDEADEMLSXGF 650
D+R +G+ ++V TP + L + ++ + VLDEAD +LS G+
Sbjct: 162 ASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGY 217
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 77.8 bits (183), Expect = 6e-15
Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 9/183 (4%)
Frame = +3
Query: 129 MDPGTLDTDWDQVVETFDDMN--LKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQ 302
MD +T ++ F ++ L ++ + GFE + +Q I +DV+
Sbjct: 1 MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVD 60
Query: 303 AQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQIXKVVIALGDHLNA 464
A +G+GKT F + ++ I S + +I++PTREL+ QI KV A+ A
Sbjct: 61 AATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDF-A 119
Query: 465 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLS 641
KC N E E G ++++GTPGR+ DM+ R L +++ +LDEAD +L
Sbjct: 120 KCREVEADMNTLE-----EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLD 174
Query: 642 XGF 650
GF
Sbjct: 175 MGF 177
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 77.4 bits (182), Expect = 8e-15
Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Frame = +3
Query: 177 FDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQ 356
FD L L+ I G+E + +Q+ + ++ +DV+A+A++GTGKT F + ++
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115
Query: 357 I--------DTSIRECQALILAPTRELAQQ-IXKVVIALGDHLNAKCHACIGGTNVREDI 509
+ D AL++ PTRELA Q + L H + IGGT + +
Sbjct: 116 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 175
Query: 510 RQLESG-VHVVVGTPGRVYDMITRR---ALHANTIKLFVLDEADEMLSXGF 650
+++++ ++V TPGR+ D I A +K+ VLDEAD +L GF
Sbjct: 176 KRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGF 226
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 77.0 bits (181), Expect = 1e-14
Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 11/169 (6%)
Frame = +3
Query: 177 FDDMN--LKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISIL 350
F D+ L ++ + FE + +Q I +DV A +G+GKT F + ++
Sbjct: 16 FSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
Query: 351 QQIDTSI------RECQALILAPTRELAQQIXKVVIALGDHL-NAKCHACIGGTNVREDI 509
+ + S + +I++PTREL+ QI V L N +GG V+ D+
Sbjct: 76 EILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADM 135
Query: 510 RQLES-GVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSXGF 650
+ +E G +V++GTPGR+ D++ R L +++ +LDEAD +L GF
Sbjct: 136 KIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGF 184
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 71.7 bits (168), Expect = 4e-13
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 10/163 (6%)
Frame = +3
Query: 171 ETFDDMNLKXXLLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISIL 350
+TF ++ +++ + F++P+ IQ A P I + I QSG+GKT + + ++
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 351 QQI--------DTSIREC-QALILAPTRELAQQIXKVVIALG-DHLNAKCHACIGGTNVR 500
Q++ S C + ++L PT ELA Q+ ++ + + GG R
Sbjct: 434 QRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQR 493
Query: 501 EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 629
+ LE GV V++ TPGR ++ L + ++ +LDE D
Sbjct: 494 TQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVD 536
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 71.7 bits (168), Expect = 4e-13
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 9/150 (6%)
Frame = +3
Query: 228 GFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------AL 389
GFE P+ +Q +AI + RDV+ A +GTGKT + ++ + + AL
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108
Query: 390 ILAPTRELAQQIXKVVIALGDHLNAKCHACI-GGTNVREDIRQLESGVHVVVGTPGRVYD 566
++ PTREL Q+ + + L + + GG ++ +L G+ +++ TPGR+ D
Sbjct: 109 VIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLD 168
Query: 567 MITRRA--LHANTIKLFVLDEADEMLSXGF 650
+ A +H N ++ + DEAD +L G+
Sbjct: 169 HLKNTASFVHKN-LRWVIFDEADSILELGY 197
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 66.5 bits (155), Expect = 1e-11
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Frame = +3
Query: 204 LLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ 383
+L + GF P+ IQ+ A+ RD I AQ+G+GKT T+ + I I+ Q
Sbjct: 87 ILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQ 146
Query: 384 ALILAPTRELAQQIXKV--VIALGDHLNAK-C--HACIGGTNVREDIRQLES-GVHVVVG 545
A+I+ PTREL Q+ KV ++A ++ K C A + G +R L++ ++V
Sbjct: 147 AVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVA 206
Query: 546 TPGRVYDMITRRALHANTIKLFVLDEAD 629
T + M+ + +++++ V+DE D
Sbjct: 207 TVASLCHMLEKHIFRIDSVRVLVVDEVD 234
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 60.9 bits (141), Expect = 7e-10
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 5/199 (2%)
Frame = +3
Query: 69 PEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKXXLLRGIYAYGFEKPSA 248
P+DSK G S+D + GT+ + + V F + + RG+ + +
Sbjct: 47 PKDSKIGKSEDGKN---------GTVFSRYAGV-RKFAQLPISDKTKRGLKDAKYVDMTD 96
Query: 249 IQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELA 416
+Q AI + RD++ A++G+GKT F I IL+++ + +I++PTRELA
Sbjct: 97 VQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELA 156
Query: 417 QQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD-MITRRALHA 593
Q V+ +G IGG + ++ ++++V PGR+ M
Sbjct: 157 AQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHMDETPNFEC 216
Query: 594 NTIKLFVLDEADEMLSXGF 650
+++ +LDEAD +L F
Sbjct: 217 PQLQILILDEADRVLDSAF 235
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 56.8 bits (131), Expect = 1e-08
Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 1/145 (0%)
Frame = +3
Query: 204 LLRGIYAYGFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQID-TSIREC 380
+LR + GF++P+ IQ++AI + R+ A A +G+GKT F +L ++ S
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGI 211
Query: 381 QALILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRV 560
+A+IL+P RELA Q + L N D +L V++ TP R+
Sbjct: 212 RAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFSKL--WCDVLISTPMRL 269
Query: 561 YDMITRRALHANTIKLFVLDEADEM 635
I + + + ++ VLDE+D++
Sbjct: 270 KRAIKAKKIDLSKVEYLVLDESDKL 294
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 56.0 bits (129), Expect = 2e-08
Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 23/158 (14%)
Frame = +3
Query: 246 AIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQ 422
A+ I P RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q
Sbjct: 50 AVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQ 109
Query: 423 IXKVVIALGDHLNAKCHACIGGTNVREDIRQ---------------------LESGVHVV 539
+ V A+ + + +G +++ +I Q LES V ++
Sbjct: 110 VKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDIL 169
Query: 540 VGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSXGF 650
V TPGR+ D I + ++ V+DE D +L +
Sbjct: 170 VATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAY 207
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 41.5 bits (93), Expect = 5e-04
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 21/162 (12%)
Frame = +3
Query: 228 GFEKPSAIQQRAIMPCIQXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-------- 383
GF++PS Q I + +DVI A++G+GKT + I+ Q+ + + +
Sbjct: 99 GFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERP 158
Query: 384 ------ALILAPTRELAQQIXKVVIALGDHLN---AKCHACIGGTNVREDIRQLESGVHV 536
+LIL P L +Q+ ++V L D + A G + + +
Sbjct: 159 FPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWPDRLPD------I 212
Query: 537 VVGTPGRVYDMI----TRRALHANTIKLFVLDEADEMLSXGF 650
+V TP + + I RR +K V DEAD +L F
Sbjct: 213 IVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSF 254
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 34.3 bits (75), Expect = 0.072
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +3
Query: 387 LILAPTRELAQQIXKVVIALGDHLNAKCHACIGGTNVREDIRQLES-GVHVVVGTPGRVY 563
L L P++ A Q+ V AL + + G + I L+S +V TP R+
Sbjct: 200 LYLVPSQSKASQVRSVCKALKG-IGIHTVSLHQGAPLDHQISGLKSVEPEFIVATPERLL 258
Query: 564 DMITRRALHANTIKLFVLDEADEMLSXGF 650
+++T + + + + L V+DE + S G+
Sbjct: 259 EIVTLKGVDISNVSLLVIDELGSLCSGGY 287
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -1
Query: 591 HEAHDELSYHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQ 445
H+ H H H+ EC H+H H H +C H H SDHQ
Sbjct: 597 HDHHHHSHSHKHE-ECNHNHDHE----HQSHSHNHEECNHNHDHHSDHQ 640
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = -1
Query: 591 HEAHDELS-YHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQELS 436
HE H + S H H+ H HHS H H +C H H +HQ S
Sbjct: 579 HEEHHQHSDSHKHEEHHEHDHHHHS------HSHKHEECNHN--HDHEHQSHS 623
>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 526
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = -2
Query: 293 NIASLDARHYCALLDCRRFFKTIGVYASQQXXFE 192
NI+ ++ + C+L+DC++ + + +A+Q F+
Sbjct: 373 NISEVEKKKVCSLMDCKKLSRDVYAHAAQNDRFQ 406
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +3
Query: 336 SISILQQIDTSIREC-QALILAPTRELA-QQIXKVVIALGDHLNAKCHACIGG 488
+++ L+++ +++EC +A+ + P+ A Q++ + + LG+ NA+ H C G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 387 LILAPTRELAQQIXKVVIALGDHLNAKCHACIGGT 491
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At4g17920.1 68417.m02670 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 289
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -1
Query: 645 LWTTFHQLHQEQKV*WCWHEAHDELSYHIHDLECPPPHEHHSP 517
L T +H HQE W E+H DL+ PPP E+ P
Sbjct: 126 LTTCYHVFHQECID--LWFESHRTCPVCRRDLDPPPPPENTKP 166
>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
putative strong similarity to cytosine-5
methyltransferase (METII) [Arabidopsis thaliana]
GI:6523846; contains Pfam profiles PF01426: BAH domain,
PF00145: C-5 cytosine-specific DNA methylase
Length = 1512
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 432 VVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVG 545
V+++L DH ++K H + +R D QL H+V G
Sbjct: 250 VLVSLRDHESSKIHKALSNVALRIDESQLVKSDHLVDG 287
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 87 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKXXLLRGIYAYGFEKPSAIQQR 260
GP + D PP MD G + D +QV ++ DD+ ++ L++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAVE--LVKGEVEVAKEAPAGVARV 140
Query: 261 AIMPCIQXR 287
+ P + R
Sbjct: 141 EVDPRLVGR 149
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +3
Query: 42 SSERRSXDWPEDSK---NGPSKDQGSYDGPPGMDPG 140
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
>At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase ;similar
to UDP-glucose:anthocyanin 5-O-glucosyltransferase
GI:4115563 from [Verbena x hybrida]
Length = 456
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 569 HIIYTTWSAHHHMNTTLQLANIFTDIGAT 483
H + T+ A H+N LQLAN GAT
Sbjct: 13 HYLLVTFPAQGHINPALQLANRLIHHGAT 41
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +3
Query: 354 QIDTSIREC-QALILAPTRELA-QQIXKVVIALGDHLNAKCHACIGG 488
+++ +++EC +A+ P+ A Q++ + + LG+ NA+ H C+ G
Sbjct: 260 RLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSG 306
>At2g43110.1 68415.m05352 expressed protein
Length = 288
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 495 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLD 620
V E + L+ V++ GTP R+ ++ AL + + + V+D
Sbjct: 191 VEEQVSLLKKRVNIGSGTPNRIKKLVDIEALGLSRLDMIVID 232
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,720,551
Number of Sequences: 28952
Number of extensions: 324713
Number of successful extensions: 1155
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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