Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B20
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    28   1.0  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    27   2.4  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    27   3.1  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    26   5.5  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   7.3  

>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 220 LIESQFYYSNLVTRDIYLFF*RFRILKKNL 131
           L ES   YS+L+T+DI L F  F+++ + L
Sbjct: 346 LFESMLGYSDLLTKDISLIFPDFKLVLQQL 375


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 342 SFELDDSGTTAIVTDTMHISRSAKANLGFIMFNKTFLASEN*LNLNF 202
           SF LDDS T +I      +   AKANL    F ++ ++ E  LN  +
Sbjct: 546 SFTLDDSNTESIKKRFDSLKEEAKANLEEQGFTESQISYELFLNCRY 592


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 369 NFLLYNWLISFELDDSGTTAIVTDTMHISRSAK 271
           N LL NW+ + E + + +   ++  +HISR  K
Sbjct: 233 NHLLINWIRASEEEKASSADRLSSALHISRDKK 265


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 290 CIVSVTIAVVPLSSSSNEINQLYK 361
           CI +  I   PL S  +E++QLYK
Sbjct: 262 CIFAEMITRTPLFSGKSELDQLYK 285


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -1

Query: 155  IPNTKKKFNAQNKIKQFPTRSWRAYRNNIRYVIFEFESWNTRSPPDA 15
            +  TK   N  N  +Q   R    Y N   +++ E   WN   PP +
Sbjct: 889  VKKTKINLNGINYKRQSGLRELNTYPNAPLHILPETIFWNPERPPSS 935


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,882
Number of Sequences: 5004
Number of extensions: 57385
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)